--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Map_shp.xml	Sat Nov 25 15:18:33 2023 +0000
@@ -0,0 +1,72 @@
+<tool id="Map_shp" name="Make a map with a shapefile" version="0.1.0+galaxy0">
+    <requirements>
+       <requirement type="package" version="4.3.2">r-base</requirement>
+       <requirement type="package" version="3.4.4">r-ggplot2</requirement>
+       <requirement type="package" version="1.0_14">r-sf</requirement>
+       <requirement type="package" version="1.1.9">r-ggspatial</requirement>
+       <requirement type="package" version="1.1.3">r-dplyr</requirement>
+       <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript
+         "$__tool_directory__/Map_shp.R"
+          #if $input1.is_of_type("shp") 
+             ${os.path.join( $input1.extra_files_path, "shapefile.shp" )} 
+          #else
+            "$input1" 
+          #end if
+         "$input2"
+         "$input3"
+         "$input4"
+         "$input5"
+         "$output"
+          
+    ]]></command>
+    <inputs>
+       <param name="input1" type="data" format="shp" label="Shapefile"/>
+       <param name="input2" type="data" format="tabular" label="Data to represent"/>
+       <param name="input3" type="text" label="What is the title of your map ?">
+          <sanitizer invalid_char="">
+              <valid initial="string.printable">
+                  <add value="é"/>
+                  <add value="è"/>
+              </valid>
+          </sanitizer>
+       </param>
+       <param name="input4" type="text" label="What is the legend of your map ?">
+          <sanitizer invalid_char="">
+              <valid initial="string.printable">
+                  <add value="é"/>
+                  <add value="è"/>
+              </valid>
+         </sanitizer>
+        </param>
+       <param name="input5" type="boolean" label="Display the geographical coordinates ?"/>
+    </inputs>
+    <outputs>
+       <data name="output" from_work_dir="map.pdf" format="pdf" label="map.pdf"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="GRECO/GRECO_l93.html" ftype="shp">
+                 <composite_data value="GRECO/GRECO_l93.shp"/>
+                 <composite_data value="GRECO/GRECO_l93.shx"/>
+                 <composite_data value="GRECO/GRECO_l93.dbf"/>
+                 <composite_data value="GRECO/GRECO_l93.prj"/>
+            </param>
+            <param name='input2' value="evolution_rate.tsv"/>
+            <param name='input3' value="Taux d'évolution du volume des bois favorables à la biodiversité par GRECO"/>
+            <param name='input4' value="Taux d'évolution (%) \nentre les périodes \n2008-2012 et 2013-2017"/>
+            <param name='input5' value="true"/>
+            <output name='output' value="map.pdf"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+==================    
+**What it does ?**
+==================
+
+This tool allows to build a map from a shapefile and color the areas according to a percentage (case study dead wood evolution rate).
+
+    ]]></help>
+</tool>