diff pampa_macros.xml @ 3:8d8aec182fb1 draft

"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit 04381ca7162ec3ec68419e308194b91d11cacb04"
author ecology
date Mon, 16 Nov 2020 11:02:09 +0000
parents c9dfe4e20a45
children 07b081730994
line wrap: on
line diff
--- a/pampa_macros.xml	Mon Jul 27 09:46:51 2020 -0400
+++ b/pampa_macros.xml	Mon Nov 16 11:02:09 2020 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION@">0.0.1</token>
+    <token name="@VERSION@">0.0.2</token>
     <xml name="Pampa_requirements">
         <requirements>
             <requirement type="package" version="1.0.2">r-tidyr</requirement>
@@ -10,11 +10,13 @@
             <requirement type="package" version="1.2.2">r-gap</requirement>
             <requirement type="package" version="1.0.1">r-glmmtmb</requirement>
             <requirement type="package" version="1.4_13">r-multcomp</requirement>
+            <requirement type="package" version="0.3.3.0">r-dharma</requirement>
         </requirements>    
     </xml>
     <xml name="Plot_requirements">
         <requirements>
             <requirement type="package" version="3.1.1">r-ggplot2</requirement>
+            <requirement type="package" version="1.3_25">r-boot</requirement>
         </requirements>    
     </xml>
     <xml name="pampa_input_calculate">
@@ -46,6 +48,7 @@
                 <option value="quasibinomial">Quasi-Binomial</option>
                 <option value="Gamma">Gamma</option>
             </param>
+            <param name="rdata" type="boolean" checked="yes" label="GLM object(s) as .Rdata output ?"/>
         </when>
     </xml>
     <xml name="pampa_input_GLM">
@@ -67,6 +70,10 @@
     <xml name="pampa_output_GLM">
         <data name="output_recap" from_work_dir="GLMSummaryFull.txt" format="txt" label="Simple statistics on chosen variables on ${on_string}"/>
         <data name="output_rate" from_work_dir="RatingGLM.txt" format="txt" label="Your analysis rating file on ${on_string}"/>
+        <collection type="list" name="output_GLM">
+            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.Rdata" visible="false" format="Rdata"/>
+            <filter> settings['advanced'] == 'advanced' and settings['rdata']</filter>
+        </collection>
     </xml>
     <xml name="pampa_bibref">
         <citations>