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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 4b040fe7867d965fb88ce70cc08081367b62b063
author | ecology |
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date | Fri, 27 Sep 2024 13:01:53 +0000 |
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#17/09/2024 #Seguineau Pauline #EML validate #Load packages library(emld) library(EML) #Load arguments args = commandArgs(trailingOnly=TRUE) if(length(args)>0){ eml_file <- args[1] }else{ stop("This tool needs at least one argument.")} #run eml_validate eml = read_eml(eml_file) eml_valid = eml_validate(eml) if(eml_valid==T){ cat("Your EML is valid.") }else if(eml_valid==F && length(attr(eml_valid,""))>1){ cat("Your EML is not valid. You can improve it by correcting these errors:","\n") attr(eml_valid,"") }else{ cat("Your EML is not valid. You can improve it by correcting this error:","\n") attr(eml_valid,"") }