Mercurial > repos > ecology > regionalgam_autocor_acf

annotate regionalgam_macros.xml @ 0:b416a363a2d5 draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
author ecology
date Thu, 20 Jun 2019 04:03:31 -0400
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b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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1 <macros>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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2 <token name="@VERSION@">1.5</token>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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3 <xml name="rg_r_requirements">
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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4 <requirements>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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5 <requirement type="package" version="3.5.1">r-base</requirement>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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6 </requirements>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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7 </xml>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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8 <xml name="rg_nlme_mass_requirements">
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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9 <requirements>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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10 <requirement type="package" version="3.1_137">r-nlme</requirement>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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11 <requirement type="package" version="7.3_50">r-mass</requirement>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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12 </requirements>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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13 </xml>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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14 <xml name="rg_count_file">
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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15 <param format="tabular,csv" name="count_file" type="data" label="Count file" help="The file must contain the SPECIES, SITE, YEAR, MONTH, DAY and COUNT columns. Csv or tabular file."/>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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16 </xml>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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17 <xml name="rg_ab_indices">
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18 <param format="tabular" name="ab_indices" type="data" label="Computed abundance indices" help="Tabular file generated by the Abundance index tool."/>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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19 </xml>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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20 <xml name="rg_collated_index">
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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21 <param name="collated_index" type="data" format="tabular" label="Collated index" help="File generated by the glmmpql/Expected temporal trend tool."/>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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22 </xml>
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23 <xml name="rg_gls_model">
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24 <param format="rdata" name="gls_model" type="data" label="Linear model" help="Linear model saved in a Rdata file."/>
b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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25 </xml>
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26 <xml name="rg_citation">
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27 <citations>
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28 <citation type="doi">10.1111/1365-2664.12561</citation>
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29 </citations>
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30 </xml>
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31 </macros>