Mercurial > repos > ecology > regionalgam_autocor_acf
comparison autocorr-res-acf.xml @ 0:b416a363a2d5 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
| author | ecology |
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| date | Thu, 20 Jun 2019 04:03:31 -0400 |
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| -1:000000000000 | 0:b416a363a2d5 |
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| 1 <tool id="regionalgam_autocor_acf" name="Autocorrelation test" version="@VERSION@"> | |
| 2 <description>check for temporal autocorrelation in the residuals</description> | |
| 3 <macros> | |
| 4 <import>regionalgam_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="rg_r_requirements"/> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 Rscript '$__tool_directory__/autocorr-res-acf.R' | |
| 9 '$gls_model' | |
| 10 '$output' | |
| 11 '$output_res_values' | |
| 12 ]]> | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <expand macro="rg_gls_model"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="png" name="output" from_work_dir="output-acf.png" /> | |
| 19 <data format="txt" name="output_res_values" from_work_dir="output-acf.txt" /> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="gls_model" value="s_gls_rda.rda"/> | |
| 24 <output name="output_res_values" file="s_res.txt"/> | |
| 25 </test> | |
| 26 </tests> | |
| 27 | |
| 28 <help><![CDATA[ | |
| 29 ====================================== | |
| 30 Model residuals autocorrelation check | |
| 31 ====================================== | |
| 32 | |
| 33 This tool is an implementation of the autocorr-res_acf function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ | |
| 34 | |
| 35 This function uses a simple linear model and explore for temporal autocorrelation that we will account in the final model. | |
| 36 | |
| 37 Use a gls model and visualize autocorrelation in the residuals with the png output file. | |
| 38 | |
| 39 | | |
| 40 | |
| 41 **Outputs** | |
| 42 | |
| 43 The tools returns residuals visualization in an image png file, and raw values in a text file. | |
| 44 | |
| 45 ]]></help> | |
| 46 <expand macro="rg_citation"/> | |
| 47 </tool> |