Mercurial > repos > ecology > regionalgam_gls

comparison gls.xml @ 0:a79f5f0f17ad draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
author ecology
date Thu, 20 Jun 2019 04:02:41 -0400
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-1:000000000000 0:a79f5f0f17ad
1 <tool id="regionalgam_gls" name="Model temporal trend" version="@VERSION@">
2 <description>with a simple linear regression</description>
3 <macros>
4 <import>regionalgam_macros.xml</import>
5 </macros>
6 <expand macro="rg_nlme_mass_requirements"/>
7 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/gls.R'
9 '$collated_index' '$ab_indices'
10 '$output' '$output2'
11 ]]>
12 </command>
13 <inputs>
14 <expand macro="rg_collated_index"/>
15 <expand macro="rg_ab_indices"/>
16 </inputs>
17 <outputs>
18 <data format="txt" name="output" from_work_dir="mod-summary.txt" />
19 <data format="rdata" name="output2" from_work_dir="mod.rda" />
20 </outputs>
21 <tests>
22 <test>
23 <param name="collated_index" value="s_glmmpql.tabular"/>
24 <param name="ab_indices" value="s_data_index.tabular"/>
25 <output name="output" file="s_gls_sum.txt"/>
26 <output name="output2" file="s_gls_rda.rda"/>
27 </test>
28 </tests>
29 <help><![CDATA[
30 ==========================
31 Model temporal trend
32 ==========================
33
34 This tool is an implementation of the gls function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/
35
36 This function model temporal trend with a simple linear regression.
37
38 |
39
40 **Outputs**
41
42 The tool returns the linear regression model in an Rdata file.
43
44 It also returns a summary of this model in txt format.
45 ]]></help>
46 <expand macro="rg_citation"/>
47 </tool>