Mercurial > repos > ecology > regionalgam_gls_adjusted
comparison gls-adjusted.xml @ 0:e2bff90af491 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
| author | ecology |
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| date | Thu, 20 Jun 2019 04:04:19 -0400 |
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| -1:000000000000 | 0:e2bff90af491 |
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| 1 <tool id="regionalgam_gls_adjusted" name="Linear regression ajusted" version="@VERSION@"> | |
| 2 <description>for autocorrelation in the residuals</description> | |
| 3 <macros> | |
| 4 <import>regionalgam_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="rg_nlme_mass_requirements"/> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 Rscript '$__tool_directory__/gls-adjusted.R' | |
| 9 '$collated_index' '$ab_indices' | |
| 10 '$output' '$output2' | |
| 11 ]]> | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <expand macro="rg_collated_index"/> | |
| 15 <expand macro="rg_ab_indices"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="txt" name="output" from_work_dir="mod_adjusted-summary.txt" /> | |
| 19 <data format="rdata" name="output2" from_work_dir="mod_adjusted.rda" /> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="collated_index" value="s_glmmpql.tabular"/> | |
| 24 <param name="ab_indices" value="s_data_index.tabular"/> | |
| 25 <output name="output" file="s_gls-adju_sum.txt"/> | |
| 26 <output name="output2" file="s_gls-adju_rda.rda" compare="sim_size" delta="100"/> | |
| 27 </test> | |
| 28 </tests> | |
| 29 <help><![CDATA[ | |
| 30 ========================== | |
| 31 Linear regression ajusted | |
| 32 ========================== | |
| 33 | |
| 34 This tool is an implementation of the gls_adjusted function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ | |
| 35 | |
| 36 This function adjust the model to account for autocorrelation in the residuals. | |
| 37 | |
| 38 | | |
| 39 | |
| 40 **Outputs** | |
| 41 | |
| 42 The tool returns the linear regression model in an Rdata file. | |
| 43 | |
| 44 It also returns a summary of this model in txt format. | |
| 45 | |
| 46 ]]></help> | |
| 47 <citations> | |
| 48 <citation type="doi">10.1111/1365-2664.12561</citation> | |
| 49 </citations> | |
| 50 </tool> |