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comparison spocc_occ.xml @ 1:f9d76a46799a draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/spocc commit 8f11ecf7d465ef7b326bab46d8c8402c85cfed77
author ecology
date Fri, 14 Jun 2019 09:00:58 -0400
parents 724ad06de5a5
children f64b3c1a80a6
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0:724ad06de5a5 1:f9d76a46799a
18 <param name="from" type="select" multiple="true" label="Data source to get data from" help="Any combination of gbif, bison, inat, ebird, antweb, ala, idigbio, obis, ecoengine and/or vertnet" value="gbif,bison,inat"> 18 <param name="from" type="select" multiple="true" label="Data source to get data from" help="Any combination of gbif, bison, inat, ebird, antweb, ala, idigbio, obis, ecoengine and/or vertnet" value="gbif,bison,inat">
19 <option value="gbif">Global Biodiversity Information Facility : GBIF</option> 19 <option value="gbif">Global Biodiversity Information Facility : GBIF</option>
20 <option value="bison">Biodiversity Information Serving Our Nation : BISON</option> 20 <option value="bison">Biodiversity Information Serving Our Nation : BISON</option>
21 <option value="inat">INaturalist : INAT</option> 21 <option value="inat">INaturalist : INAT</option>
22 <option value="ebird">eBbird</option> 22 <option value="ebird">eBbird</option>
23 <!--
23 <option value="antweb">AntWeb</option> 24 <option value="antweb">AntWeb</option>
24 <option value="ala">Atlas of Living Australia : ALA</option> 25 <option value="ala">Atlas of Living Australia : ALA</option>
25 <option value="idigbio">Integrated Digitized Biocollections : iDigBio</option> 26 <option value="idigbio">Integrated Digitized Biocollections : iDigBio</option>
26 <option value="obis">Oceanic Biogeographic Information System : OBIS</option> 27 <option value="obis">Oceanic Biogeographic Information System : OBIS</option>
28 -->
27 <option value="ecoengine">Berkeley Ecoinformatics Engine : EcoEngine</option> 29 <option value="ecoengine">Berkeley Ecoinformatics Engine : EcoEngine</option>
28 <option value="vernet">VerNet</option> 30 <option value="vertnet">VertNet</option>
29 </param> 31 </param>
30 <param name="limit" type="integer" label="Number of records to return" help="This is passed across all sources" value="500"/> 32 <param name="limit" type="integer" label="Number of records to return" help="This is passed across all sources" value="500"/>
31 </inputs> 33 </inputs>
32 <outputs> 34 <outputs>
33 <data name="output" format="tabular" from_work_dir="output.tab" label="Species occurences"/> 35 <data name="output" format="tabular" from_work_dir="output.tab" label="Species occurences"/>
58 60
59 **How to use it** 61 **How to use it**
60 62
61 Enter a species scientific name, be careful that the tool is case sensitive. Eg : Canis lupus. 63 Enter a species scientific name, be careful that the tool is case sensitive. Eg : Canis lupus.
62 64
63 Select one or more data source. It can be any combination of gbif, bison, inat, ebird, antweb, ala, idigbio, obis, ecoengine and/or vertnet. 65 Select one or more data source. It can be any combination of gbif, bison, inat, ebird, ecoengine and/or vertnet.
64 66
65 | 67 |
66 68
67 **Output** 69 **Output**
68 70
93 https://ebird.org/home 95 https://ebird.org/home
94 96
95 - Berkeley Ecoinformatics Engine : EcoEngine 97 - Berkeley Ecoinformatics Engine : EcoEngine
96 https://ecoengine.berkeley.edu/ 98 https://ecoengine.berkeley.edu/
97 99
98 - AntWeb
99 https://www.antweb.org/
100
101 - Integrated Digitized Biocollections : iDigBio
102 https://www.idigbio.org/
103
104 - VertNet 100 - VertNet
105 http://vertnet.org/ 101 http://vertnet.org/
106 102
107 - Ocean Biogeographic Information System : OBIS 103 .. - AntWeb
108 https://obis.org/ 104 .. https://www.antweb.org/
109 105
110 - Atlas of Living Australia : ALA 106 .. - Integrated Digitized Biocollections : iDigBio
111 https://www.ala.org.au/. 107 .. https://www.idigbio.org/
108
109 .. - Ocean Biogeographic Information System : OBIS
110 .. https://obis.org/
111
112 .. - Atlas of Living Australia : ALA
113 .. https://www.ala.org.au/.
112 114
113 115
114 Includes functionality for retrieving species occurrence data, and combining those data. 116 Includes functionality for retrieving species occurrence data, and combining those data.
115 117
116 | 118 |