Mercurial > repos > ecology > timeseries_extraction
diff macros_tests_netcdf2netcdf.xml @ 0:810820a0d45c draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit fd8ad4d97db7b1fd3876ff63e14280474e06fdf7
| author | ecology |
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| date | Sun, 31 Jul 2022 21:23:21 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros_tests_netcdf2netcdf.xml Sun Jul 31 21:23:21 2022 +0000 @@ -0,0 +1,263 @@ +<macros> + <xml name="section_tests"> + <tests> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="chl"/> + <param name="scale" value="1000.5"/> + </section> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="isel_list"/> + <repeat name="user_choice"> + <param name="dim" value="time"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="10"/> + <param name="t2" value="12"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="5"/> + <param name="t2" value="10"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="4"/> + <param name="t2" value="10"/> + </conditional> + </repeat> + </conditional> + </section> + <output name="output_netcdf" file="small.netcdf" compare="sim_size" delta="1000"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="chl"/> + <param name="scale" value="1000.5"/> + <param name="write_all" value="true"/> + <param name="keep_attribute" value="false"/> + </section> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="isel_list"/> + <repeat name="user_choice"> + <param name="dim" value="time"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="10"/> + <param name="t2" value="12"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="5"/> + <param name="t2" value="10"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="4"/> + <param name="t2" value="10"/> + </conditional> + </repeat> + </conditional> + </section> + <output name="output_netcdf" file="all.netcdf" compare="sim_size" delta="1000"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="isel_list"/> + <repeat name="user_choice"> + <param name="dim" value="time"/> + <param name="dim_tab" value="time.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="to"/> + <param name="value" value="12"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="is"/> + <param name="value" value="5"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="is"/> + <param name="value" value="4"/> + </conditional> + </repeat> + </conditional> + </section> + <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="isel"/> + <repeat name="user_choice"> + <param name="dim" value="time"/> + <param name="dim_tab" value="time.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="to"/> + <param name="value" value="12"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="is"/> + <param name="value" value="5"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="is"/> + <param name="value" value="4"/> + </conditional> + </repeat> + </conditional> + </section> + <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="chl,nh4"/> + </section> + <output name="output_netcdf" file="chl_nh4.netcdf" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="data_to_20040615.nc,data_from_20040615.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="nh4"/> + </section> + <output name="output_netcdf" file="chl_alltimes.nc" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="sel"/> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="44.5"/> + <param name="t2" value="45.0"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="is"/> + <param name="value" value="-3.5"/> + <param name="method" value="nearest"/> + </conditional> + </repeat> + </conditional> + </section> + <output name="output_netcdf" file="select_by_values.netcdf" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="chl,phy"/> + </section> + <section name="mask_values"> + <conditional name="mask_condi"> + <param name="mask_option" value="other"/> + <param name="set_other" value="1000"/> + </conditional> + <param name="where_condition" ftype="txt" value="where_condition.txt"/> + </section> + <output name="output_netcdf" file="chl_phy_where.netcdf" compare="sim_size" delta="500"/> + </test> + <test> + <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/> + <param name="var_tab" value="var_tab_dataset-ibi"/> + <section name="variable"> + <param name="var" value="chl"/> + <param name="scale" value="1000.5"/> + <param name="write_all" value="true"/> + <param name="keep_attribute" value="true"/> + </section> + <section name="subset_coords"> + <conditional name="tsel"> + <param name="by_click" value="isel_list"/> + <repeat name="user_choice"> + <param name="dim" value="time"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="10"/> + <param name="t2" value="12"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="latitude"/> + <param name="dim_tab" value="latitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="0"/> + <param name="t2" value="10"/> + </conditional> + </repeat> + <repeat name="user_choice"> + <param name="dim" value="longitude"/> + <param name="dim_tab" value="longitude.tabular"/> + <conditional name="condi_between"> + <param name="comparator" value="sl"/> + <param name="t1" value="1"/> + <param name="t2" value="20"/> + </conditional> + </repeat> + </conditional> + </section> + <section name="mask_values"> + <conditional name="mask_condi"> + <param name="mask_option" value="drop"/> + </conditional> + <param name="where_condition" ftype="txt" value="where_condition_simple.txt"/> + </section> + <output name="output_netcdf" file="chl_where_drop.netcdf" compare="sim_size" delta="500"/> + </test> + </tests> + </xml> +</macros>