Mercurial > repos > ecology > tool_odv
changeset 6:bdc969c006fe draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_data_view_manager commit 9439bd5028eacdaaaff42dd2e095cb6ddc5af56e
| author | ecology |
|---|---|
| date | Fri, 25 Jul 2025 09:44:28 +0000 (2 days ago) |
| parents | 418e44128024 |
| children | |
| files | tool_odv.xml |
| diffstat | 1 files changed, 18 insertions(+), 20 deletions(-) [+] |
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--- a/tool_odv.xml Mon Jul 21 15:55:08 2025 +0000 +++ b/tool_odv.xml Fri Jul 25 09:44:28 2025 +0000 @@ -2,7 +2,7 @@ <description>tool for qualificiation and validation</description> <macros> <token name="@VERSION@">1.3</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> </macros> <requirements> <container type="docker">easyqcvbgc/easy-qcv_odv-coll-manager_tool:oc@VERSION@</container> @@ -32,7 +32,7 @@ #if $config.type == 'yes': ## Write YAML content - cp '${config_file}' '/runtime/config/config_user_odv_tool.yml' && + cp '${config_file}' '/runtime/config/config_user_odv_manager.yml' && #end if /app/launchers/start-app.sh && @@ -46,30 +46,28 @@ #if $config.type == 'yes': default: file_name_list_raw: - #for $i, $infile in enumerate($input_raw): + #for $infile in $input_raw: #set real_name = $infile.element_identifier #set extension = $real_name.split('.')[-1] - #if $extension == 'nc': - #set name_raw='${infile.element_identifier}' - #else: - #set name_raw='${infile.element_identifier}.nc' - #end if + #if $extension == 'nc': + - ${infile.element_identifier} + #else + - ${infile.element_identifier}.nc + #end if #end for - - ${name_raw} - operator: '${config.operator}' + operator: ${config.operator} QV: file_name_list_ref: - #for $i, $infile in enumerate($input_ref): - #set name_ref='${infile.element_identifier}' + #for $infile in $input_ref : + - ${infile.element_identifier} #end for - - ${name_ref} odv_collection: name: "odv_collection.txt" - qc_convention: '${config.qc_convention}' + qc_convention: ${config.qc_convention} tool_option: - subsetting: '${config.subsetting}' - plt: '${config.plt}' - #end if + subsetting: ${config.subsetting} + plt: ${config.plt} + #end if </configfile> </configfiles> <inputs> @@ -99,15 +97,15 @@ <option value="OceanSITES">OceanSITES</option> <option value="IODE">IODE</option> </param> - <param name="subsetting" type="float" min="-1" max="1" value="1" label="Enter subsetting (default: 1)"/> - <param name="plt" type="float" min="0" max="1" value="0" label="Enter plt (default: 0 for QV, 1 for demo)"/> + <param name="subsetting" type="integer" min="-1" max="1" value="1" label="Enter subsetting (default: 1)"/> + <param name="plt" type="integer" min="0" max="1" value="0" label="Enter plt (default: 0 for QV, 1 for demo)"/> </when> <when value="no"> </when> </conditional> </inputs> <outputs> - <data name="output" format="txt" label="ODV tool output"/> + <data name="output" format="txt" label="ODV collection manager output"/> <collection type="list" name="files" label="ODV tool collection"> <discover_datasets pattern="(?P<designation>.+)" directory="./outputs" recurse="true" format="txt"/> </collection>