Mercurial > repos > ecology > xarray_import_data
diff xarray_import_data.py @ 0:f1b185fc409a draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/xarray_import_data commit 99843e9b86bfb355026559d36e29ed5a262aa9b0
author | ecology |
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date | Thu, 14 Aug 2025 08:54:07 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/xarray_import_data.py Thu Aug 14 08:54:07 2025 +0000 @@ -0,0 +1,36 @@ +"""Import OPeNDAP dataset using xarray to a netCDF file.""" + +import argparse + +import xarray as xr + +parser = argparse.ArgumentParser() + +parser.add_argument( + "opendap_url", + help=( + "A valid OPeNDAP URL, also see " + "https://docs.xarray.dev/en/stable/user-guide/io.html#opendap" + ), +) +parser.add_argument( + "decode_times", + type=lambda x: x == "true", + help='If time should be decoded, e.g. "True" or "False"', +) +parser.add_argument( + "decode_cf", + type=lambda x: x == "true", + help=( + "Whether to decode according to " + 'CF conventions e.g. "true" or "false"' + ), +) +parser.add_argument("output_dataset", help="netCDF file to output") +args = parser.parse_args() + +xr.open_dataset( + args.opendap_url.strip(), + decode_cf=args.decode_cf, + decode_times=args.decode_times, +).to_netcdf(args.output_dataset)