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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/xarray_import_data commit 99843e9b86bfb355026559d36e29ed5a262aa9b0
author | ecology |
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date | Thu, 14 Aug 2025 08:54:07 +0000 |
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"""Import OPeNDAP dataset using xarray to a netCDF file.""" import argparse import xarray as xr parser = argparse.ArgumentParser() parser.add_argument( "opendap_url", help=( "A valid OPeNDAP URL, also see " "https://docs.xarray.dev/en/stable/user-guide/io.html#opendap" ), ) parser.add_argument( "decode_times", type=lambda x: x == "true", help='If time should be decoded, e.g. "True" or "False"', ) parser.add_argument( "decode_cf", type=lambda x: x == "true", help=( "Whether to decode according to " 'CF conventions e.g. "true" or "false"' ), ) parser.add_argument("output_dataset", help="netCDF file to output") args = parser.parse_args() xr.open_dataset( args.opendap_url.strip(), decode_cf=args.decode_cf, decode_times=args.decode_times, ).to_netcdf(args.output_dataset)