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comparison xarray_metadata_info.xml @ 3:663268794710 draft

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"planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit 57b6d23e3734d883e71081c78e77964d61be82ba"
author ecology
date Sun, 06 Jun 2021 08:49:43 +0000
parents e8650cdf092f
children 9bbaab36a5d4
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2:e8650cdf092f 3:663268794710
1 <tool id="xarray_metadata_info" name="NetCDF xarray Metadata Info" version="0.15.1"> 1 <tool id="xarray_metadata_info" name="NetCDF xarray Metadata Info" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>summarize content of a Netcdf file</description> 2 <description>summarize content of a Netcdf file</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="edam_ontology"/>
3 <requirements> 7 <requirements>
4 <requirement type="package" version="3">python</requirement> 8 <requirement type="package" version="3">python</requirement>
5 <requirement type="package" version="1.5.3">netcdf4</requirement> 9 <requirement type="package" version="1.5.6">netcdf4</requirement>
6 <requirement type="package" version="0.15.1">xarray</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">xarray</requirement>
7 <requirement type="package" version="0.7.0">geopandas</requirement> 11 <requirement type="package" version="0.9.0">geopandas</requirement>
8 <requirement type="package" version="1.7.0">shapely</requirement> 12 <requirement type="package" version="1.7.1">shapely</requirement>
9 </requirements> 13 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 14 <command detect_errors="exit_code"><![CDATA[
11 python3 '$__tool_directory__/xarray_tool.py' '$input' --info '$info' --summary '$output' 15 python3 '$__tool_directory__/xarray_tool.py' '$input' --info '$info' --summary '$output'
12 ]]></command> 16 ]]></command>
13 <inputs> 17 <inputs>
41 <has_text_matching expression="depth\t1\tdepth\t1"/> 45 <has_text_matching expression="depth\t1\tdepth\t1"/>
42 </assert_contents> 46 </assert_contents>
43 </output> 47 </output>
44 </test> 48 </test>
45 </tests> 49 </tests>
46 <edam_topics>
47 <edam_topic>topic_0610</edam_topic>
48 <edam_topic>topic_3050</edam_topic>
49 </edam_topics>
50 <help><![CDATA[ 50 <help><![CDATA[
51 **What it does** 51 **What it does**
52 52
53 First the tool will give general information about the input in a 'info file' output. (command $ncdump -h inputfile) 53 First the tool will give general information about the input in a 'info file' output. (command $ncdump -h inputfile)
54 54
80 80
81 The Netcdf Info tool use the netcdf functions : https://www.unidata.ucar.edu/software/netcdf/docs/index.html 81 The Netcdf Info tool use the netcdf functions : https://www.unidata.ucar.edu/software/netcdf/docs/index.html
82 82
83 Run this tool before considering using Netcdf Read. 83 Run this tool before considering using Netcdf Read.
84 ]]></help> 84 ]]></help>
85 85 <expand macro="citations"/>
86 </tool> 86 </tool>