Mercurial > repos > ecology > xarray_netcdf2netcdf
diff macros_netcdf2netcdf.xml @ 2:e87073edecd6 draft
"planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit 2166974df82f97557b082a9e55135098e61640c4"
| author | ecology |
|---|---|
| date | Thu, 20 Jan 2022 17:08:29 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros_netcdf2netcdf.xml Thu Jan 20 17:08:29 2022 +0000 @@ -0,0 +1,143 @@ +<macros> + <xml name="coord_range"> + <repeat name="user_choice" title="Filter by coordinate values" min="0" max="20" help="Use this option to filter on the values of the selected coordinate"> + <param name="dim" type="select" label="Dimensions"> + <options from_dataset="var_tab"> + <column name="value" index="0"/> + </options> + </param> + <conditional name="condi_between"> + <param name="comparator" type="select" label="Comparator"> + <option value="is">is</option> + <option value="from">from</option> + <option value="to">to</option> + <option value="sl">slice(threshold1,threshold2)</option> + </param> + <when value="sl"> + <param name="t1" type="text" value="" label="Choose the start value for slice"/> + <param name="t2" type="text" value="" label="Choose the end value for slice"/> + </when> + <when value="to"> + <param name="value" type="text" value="" label="Choose the end value"/> + </when> + <when value="from"> + <param name="value" type="text" value="" label="Choose the start value"/> + </when> + <when value="is"> + <param name="value" type="text" value="" label="Choose the value to select"/> + <yield /> + </when> + </conditional> + </repeat> + </xml> + <xml name="section_variables"> + <section name="variable" title="Select variables"> + <param name="var" type="select" multiple="true" label="Choose variables to extract"> + <options from_dataset="var_tab"> + <column name="name" index="0"/> + <column name="value" index="0"/> + </options> + </param> + <param type="float" name="scale" optional="true" help="scale factor (float) to apply to the selected variable (optional and only if a variable is selected)"/> + <param name="write_all" type="boolean" checked="false" label="Write all variables to new netCDF file (only if a variable is selected)"/> + <param name="keep_attributes" type="boolean" checked="true" label="Keep all attributes (only if a variable is selected)"/> + </section> + </xml> + <xml name="section_coords"> + <section name="subset_coords" title="Subset by coordinates"> + <conditional name="tsel"> + <param name="by_click" type="select" optional="true" label="Coordinate values"> + <option value="sel">Coordinate values (sel)</option> + <option value="isel">Coordinate indices (isel)</option> + <option value="isel_list" selected="true">Coordinate values from list</option> + </param> + <when value="sel"> + <expand macro="coord_range"> + <param name="method" type="select" multiple="false" label="Choose selection method"> + <option value="None">only exact matches</option> + <option value="nearest">use nearest valid index value</option> + <option value="pad">propagate last valid index value forward</option> + <option value="backfill">propagate next valid index value backward</option> + </param> + </expand> + </when> + <when value="isel"> + <expand macro="coord_range"/> + </when> + <when value="isel_list"> + <repeat name="user_choice" title="Filter by coordinate values" min="0" max="20" help="Use this option to filter on the values of the selected coordinate"> + <param name="dim" type="select" label="Dimensions"> + <options from_dataset="var_tab"> + <column name="value" index="0"/> + </options> + </param> + <param type="data" label="Tabular containing values of this dimension" name="dim_tab" format="tabular" help="File containing values for this dimension."/> + <conditional name="condi_between"> + <param name="comparator" type="select" label="Comparator"> + <option value="is">is</option> + <option value="from">from</option> + <option value="to">to</option> + <option value="sl">slice(threshold1,threshold2)</option> + </param> + <when value="sl"> + <param name="t1" type="select" multiple="false" label="Choose the start value for slice"> + <options from_dataset="dim_tab"> + <column name="name" index="1"/> + <column name="value" index="0"/> + </options> + </param> + <param name="t2" type="select" multiple="false" label="Choose the end value for slice"> + <options from_dataset="dim_tab"> + <column name="name" index="1"/> + <column name="value" index="0"/> + </options> + </param> + </when> + <when value="is"> + <param name="value" type="select" multiple="false" label="Choose the value to select"> + <options from_dataset="dim_tab"> + <column name="name" index="1"/> + <column name="value" index="0"/> + </options> + </param> + </when> + <when value="to"> + <param name="value" type="select" multiple="false" label="Choose the end value"> + <options from_dataset="dim_tab"> + <column name="name" index="1"/> + <column name="value" index="0"/> + </options> + </param> + </when> + <when value="from"> + <param name="value" type="select" multiple="false" label="Choose the start value"> + <options from_dataset="dim_tab"> + <column name="name" index="1"/> + <column name="value" index="0"/> + </options> + </param> + </when> + </conditional> + </repeat> + </when> + </conditional> + </section> + </xml> + <xml name="section_where"> + <section name="mask_values" title="Advanced options to mask by values"> + <conditional name="mask_condi"> + <param name="mask_option" type="select" multiple="false" label="Option for masked values"> + <option value="keep" selected="true">Fill with NA</option> + <option value="drop">Drop values</option> + <option value="other">Set constant</option> + </param> + <when value="keep"/> + <when value="drop"/> + <when value="other"> + <param name="set_other" type="float" value="0" label="Value to use for locations in this object where cond is False." /> + </when> + </conditional> + <param name="where_condition" type="data" optional="true" format="txt" label="file containing a where expression" /> + </section> + </xml> +</macros>