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view macros_tests_netcdf2netcdf.xml @ 2:e87073edecd6 draft

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"planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit 2166974df82f97557b082a9e55135098e61640c4"
author ecology
date Thu, 20 Jan 2022 17:08:29 +0000
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<macros>
    <xml name="section_tests">
        <tests>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="chl"/>
                    <param name="scale" value="1000.5"/>
                </section>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="isel_list"/>
                        <repeat name="user_choice">
                            <param name="dim" value="time"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="10"/>
                                <param name="t2" value="12"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="5"/>
                                <param name="t2" value="10"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="4"/>
                                <param name="t2" value="10"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <output name="output_netcdf" file="small.netcdf" compare="sim_size" delta="1000"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="chl"/>
                    <param name="scale" value="1000.5"/>
                    <param name="write_all" value="true"/>
                    <param name="keep_attribute" value="false"/>
                </section>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="isel_list"/>
                        <repeat name="user_choice">
                            <param name="dim" value="time"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="10"/>
                                <param name="t2" value="12"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="5"/>
                                <param name="t2" value="10"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="4"/>
                                <param name="t2" value="10"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <output name="output_netcdf" file="all.netcdf" compare="sim_size" delta="1000"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="isel_list"/>
                        <repeat name="user_choice">
                            <param name="dim" value="time"/>
                            <param name="dim_tab" value="time.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="to"/>
                                <param name="value" value="12"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="is"/>
                                <param name="value" value="5"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="is"/>
                                <param name="value" value="4"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="isel"/>
                        <repeat name="user_choice">
                            <param name="dim" value="time"/>
                            <param name="dim_tab" value="time.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="to"/>
                                <param name="value" value="12"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="is"/>
                                <param name="value" value="5"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="is"/>
                                <param name="value" value="4"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="chl,nh4"/>
                </section>
                <output name="output_netcdf" file="chl_nh4.netcdf" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="data_to_20040615.nc,data_from_20040615.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="nh4"/>
                </section>
                <output name="output_netcdf" file="chl_alltimes.nc" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="sel"/>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="44.5"/>
                                <param name="t2" value="45.0"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="is"/>
                                <param name="value" value="-3.5"/>
                                <param name="method" value="nearest"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <output name="output_netcdf" file="select_by_values.netcdf" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="chl,phy"/>
                </section>
                <section name="mask_values">
                    <conditional name="mask_condi">
                        <param name="mask_option" value="other"/>
                        <param name="set_other" value="1000"/>
                    </conditional>
                    <param name="where_condition" ftype="txt" value="where_condition.txt"/>
                </section>
                <output name="output_netcdf" file="chl_phy_where.netcdf" compare="sim_size" delta="500"/>
            </test>
            <test>
                <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
                <param name="var_tab" value="var_tab_dataset-ibi"/>
                <section name="variable">
                    <param name="var" value="chl"/>
                    <param name="scale" value="1000.5"/>
                    <param name="write_all" value="true"/>
                    <param name="keep_attribute" value="true"/>
                </section>
                <section name="subset_coords">
                    <conditional name="tsel">
                        <param name="by_click" value="isel_list"/>
                        <repeat name="user_choice">
                            <param name="dim" value="time"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="10"/>
                                <param name="t2" value="12"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="latitude"/>
                            <param name="dim_tab" value="latitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="0"/>
                                <param name="t2" value="10"/>
                            </conditional>
                        </repeat>
                        <repeat name="user_choice">
                            <param name="dim" value="longitude"/>
                            <param name="dim_tab" value="longitude.tabular"/>
                            <conditional name="condi_between">
                                <param name="comparator" value="sl"/>
                                <param name="t1" value="1"/>
                                <param name="t2" value="20"/>
                            </conditional>
                        </repeat>
                    </conditional>
                </section>
                <section name="mask_values">
                    <conditional name="mask_condi">
                        <param name="mask_option" value="drop"/>
                    </conditional>
                    <param name="where_condition" ftype="txt" value="where_condition_simple.txt"/>
                </section>
                <output name="output_netcdf" file="chl_where_drop.netcdf" compare="sim_size" delta="500"/>
            </test>
        </tests>
    </xml>
</macros>