Mercurial > repos > edward-kirton > roche454_toolsuite
comparison roche454/sfffile.xml @ 0:f036c7107601
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
| author | edward-kirton |
|---|---|
| date | Tue, 07 Jun 2011 17:50:32 -0400 |
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| -1:000000000000 | 0:f036c7107601 |
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| 1 <tool id="sfffile" name="Sff File" version="1.0.0"> | |
| 2 <description>Select reads to include or exclude from one or more input Sff files</description> | |
| 3 <command>sfffile -$include_or_exclude $list_file -o $output | |
| 4 #for $i in $inputs | |
| 5 ${i.input} | |
| 6 #end for | |
| 7 </command> | |
| 8 <inputs> | |
| 9 <repeat name="inputs" title="Input Files"> | |
| 10 <param name="input" type="data" format="sff" label="Sff file"/> | |
| 11 </repeat> | |
| 12 <param name="list_file" type="data" format="text" label="List of read IDs"/> | |
| 13 <param name="include_or_exclude" type="select" label="Include or exclude the named reads?"> | |
| 14 <option value='i' selected='true'>include</option> | |
| 15 <option value='e'>exclude</option> | |
| 16 </param> | |
| 17 </inputs> | |
| 18 | |
| 19 <outputs> | |
| 20 <data name="output" format="sff"/> | |
| 21 </outputs> | |
| 22 | |
| 23 <help> | |
| 24 | |
| 25 **What it does** | |
| 26 | |
| 27 This tool creates an Sff file, either including or excluding named reads. | |
| 28 </help> | |
| 29 </tool> |