Mercurial > repos > edward-kirton > roche454_toolsuite

diff runMapping_cDNA_wrapper.pl @ 3:bf1f8bc4abe6 default tip

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minor updates for v2.6
author eskirton@lbl.gov
date Wed, 21 Dec 2011 19:42:53 -0800
parents 2d86d5b112e8
children
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--- a/runMapping_cDNA_wrapper.pl	Thu Jul 14 22:14:07 2011 -0400
+++ b/runMapping_cDNA_wrapper.pl	Wed Dec 21 19:42:53 2011 -0800
@@ -36,9 +36,8 @@
 my @cmd=removeUnusedOptions(@ARGV);
 
 # RUN COMMAND
-# NOTE: FIRST ARG EXPECTED TO BE EXECUTABLE
 my $stderr;
-eval { $stderr=`@cmd 2>&1`; };
+eval { $stderr=`runMapping @cmd 2>&1`; };
 if ( $@ ) {
     print STDERR "Newbler ERROR: $stderr\n";
     `cat $outdir/assembly/454NewblerProgress.txt 1>&2`;