Mercurial > repos > edward-kirton > roche454_toolsuite
view sfffile.xml @ 3:bf1f8bc4abe6 default tip
minor updates for v2.6
author | eskirton@lbl.gov |
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date | Wed, 21 Dec 2011 19:42:53 -0800 |
parents | 2d86d5b112e8 |
children |
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<tool id="sfffile" name="Sff File" version="1.0.0"> <description>Select reads to include or exclude from one or more input Sff files</description> <command>sfffile -$include_or_exclude $list_file -o $output #for $i in $inputs ${i.input} #end for </command> <inputs> <repeat name="inputs" title="Input Files"> <param name="input" type="data" format="sff" label="Sff file"/> </repeat> <param name="list_file" type="data" format="text" label="List of read IDs"/> <param name="include_or_exclude" type="select" label="Include or exclude the named reads?"> <option value='i' selected='true'>include</option> <option value='e'>exclude</option> </param> </inputs> <outputs> <data name="output" format="sff"/> </outputs> <help> **What it does** This tool creates an Sff file, either including or excluding named reads. </help> </tool>