annotate bsmap_fasta.loc.sample @ 6:bce9005066b1 draft

Deleted selected files
author eiriche
date Thu, 29 Nov 2012 10:14:46 -0500
parents 41f30b042bac
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
41f30b042bac Uploaded
eiriche
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that enables BSMAP
41f30b042bac Uploaded
eiriche
parents:
diff changeset
2 #to use a directory of reference FastA sequences data files.The bsmap_fasta.loc
41f30b042bac Uploaded
eiriche
parents:
diff changeset
3 #file has this format (longer white space characters are TAB characters):
41f30b042bac Uploaded
eiriche
parents:
diff changeset
4 #
41f30b042bac Uploaded
eiriche
parents:
diff changeset
5 #<unique_build_id> <dbkey> <display_name> <file_path>
41f30b042bac Uploaded
eiriche
parents:
diff changeset
6 #
41f30b042bac Uploaded
eiriche
parents:
diff changeset
7 #
41f30b042bac Uploaded
eiriche
parents:
diff changeset
8 #Your bsmap_fasta.loc file should include an entry per line for each
41f30b042bac Uploaded
eiriche
parents:
diff changeset
9 reference you have stored. For example:
41f30b042bac Uploaded
eiriche
parents:
diff changeset
10 #
41f30b042bac Uploaded
eiriche
parents:
diff changeset
11 #phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fasta
41f30b042bac Uploaded
eiriche
parents:
diff changeset
12 #hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fasta
41f30b042bac Uploaded
eiriche
parents:
diff changeset
13 #hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fasta
41f30b042bac Uploaded
eiriche
parents:
diff changeset
14 #/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fasta
41f30b042bac Uploaded
eiriche
parents:
diff changeset
15 #...etc...
41f30b042bac Uploaded
eiriche
parents:
diff changeset
16 #