Mercurial > repos > eiriche > bsmap
view bsmap_meth_caller.sh @ 5:98a0a60e934c draft
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author | eiriche |
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date | Thu, 29 Nov 2012 10:10:55 -0500 |
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#!/bin/bash # # Galaxy wrapper for BSMAP Methylation Caller # set -e #get parameters until [ $# -eq 0 ] do case $1 in input=*) input=${1#input=} ;; method=*) method=${1#method=} ;; output=*) output=${1#output=} ;; tempdir=*) tempdir=${1#tempdir=} ;; ref=*) ref=${1#ref=} ;; esac shift done methratio.py -o $output -d $ref -q $input