Mercurial > repos > eiriche > bsmap
changeset 33:91a4092971bc draft default tip
Uploaded
author | eiriche |
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date | Mon, 03 Dec 2012 03:10:42 -0500 |
parents | 117639df067a |
children | |
files | README.txt |
diffstat | 1 files changed, 17 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.txt Mon Dec 03 03:10:42 2012 -0500 @@ -0,0 +1,17 @@ +BSMAP 2.6 Wrapper +Written by Eugen Eirich @ Institute of Molecular Biology Mainz +Contact: e.eirich@imb-mainz.de + +1. Dependencies +To use the wrapper, please install BSMAP 2.6 and the Samtools package manually to your dependencies directory. + +2. Reference genomes +You can either use reference genomes from your history or built-in genomes. The built-in genomes are specified +in the file "bsmap_fasta.loc" in your tool-data directory. + +3. WIG parser +There is a WIG parser included in the repo, which converts the BSMAP Methylation Caller ouptut into WIG format. +To use this parser, please first path the file "methratio.py" in your BSMAP directory with the included file +"methratio.patch": + +/path/to/bsmap/methratio.py < methratio.patch \ No newline at end of file