Mercurial > repos > elindfor > test_rep
comparison scatterplot.xml @ 5:635c4cfd83ee draft default tip
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| author | elindfor |
|---|---|
| date | Wed, 15 Jan 2014 04:33:21 -0500 |
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| 4:ec1cc2cd9c93 | 5:635c4cfd83ee |
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| 1 <tool id="scatterplot_rpy" name="Scatterplot"> | |
| 2 <description>of two numeric columns</description> | |
| 3 <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> | |
| 6 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> | |
| 7 <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" /> | |
| 8 <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/> | |
| 9 <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/> | |
| 10 <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="pdf" name="out_file1" /> | |
| 14 </outputs> | |
| 15 <requirements> | |
| 16 <requirement type="python-module">rpy</requirement> | |
| 17 </requirements> | |
| 18 <!-- TODO: uncomment the following test when we have tools.update_state() working for | |
| 19 multiple dependents with the same dependency. | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/> | |
| 23 <param name="col1" value="2"/> | |
| 24 <param name="col2" value="3"/> | |
| 25 <param name="title" value="Scatterplot"/> | |
| 26 <param name="xlab" value="V1"/> | |
| 27 <param name="ylab" value="V2"/> | |
| 28 <output name="out_file1" file="scatterplot_out1.pdf" /> | |
| 29 </test> | |
| 30 </tests> | |
| 31 --> | |
| 32 <help> | |
| 33 | |
| 34 .. class:: infomark | |
| 35 | |
| 36 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
| 37 | |
| 38 ----- | |
| 39 | |
| 40 **Syntax** | |
| 41 | |
| 42 This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset. | |
| 43 | |
| 44 - All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item. | |
| 45 | |
| 46 - **Plot title** The scatterplot title | |
| 47 - **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot. | |
| 48 | |
| 49 ----- | |
| 50 | |
| 51 **Example** | |
| 52 | |
| 53 - Input file:: | |
| 54 | |
| 55 1 68 4.1 | |
| 56 2 71 4.6 | |
| 57 3 62 3.8 | |
| 58 4 75 4.4 | |
| 59 5 58 3.2 | |
| 60 6 60 3.1 | |
| 61 7 67 3.8 | |
| 62 8 68 4.1 | |
| 63 9 71 4.3 | |
| 64 10 69 3.7 | |
| 65 | |
| 66 - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset. | |
| 67 | |
| 68 .. image:: ${static_path}/images/scatterplot.png | |
| 69 | |
| 70 </help> | |
| 71 </tool> |