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5
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1 <tool id="tcga_heatmap" name="TCGA_HEATMAP" >
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2 <requirements>
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3 <container type="docker">bianca7/lncrna:tcga</container>
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4 </requirements>
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5 <description>Test your signature on TCGA data</description>
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6 <stdio>
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7 <exit_code range="1:" level="fatal" />
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8 </stdio>
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9 <command><![CDATA[ Rscript /Heatmap1.R -g "$signature" -c "$cancer_type" -R "/$output1" -o "/$output2"
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10 ]]></command>
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11 <inputs>
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12 <param format="tabular,txt" name="signature" type="data" label="gene signature" />
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13 <param name="cancer_type" type="text" label="TCGA-cancer project" />
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14 </inputs>
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15 <outputs>
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16 <data format="pdf" name="output1" label="Heatmap"/>
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17 <data format="html" name="output2" label="Heatmap"/>
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18 </outputs>
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19 </tool>
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