Mercurial > repos > enios > nc_rna

diff csv2json.xml @ 7:66387d7a2baf draft

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author enios
date Wed, 21 Apr 2021 11:13:06 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/csv2json.xml	Wed Apr 21 11:13:06 2021 +0000
@@ -0,0 +1,15 @@
+<tool id="csv2json" name="csv2json" >
+<requirements>
+	<container type="docker">bianca7/lncrna:csv2json</container>
+</requirements>
+<description>CSV to JSON for Cytoscape.js visualization</description>
+<command><![CDATA[ python /code/csv2json.py --file "$input" && cp *.json "$output"
+]]></command>
+<inputs>
+	<param name="input" type="data" label="CSV input (rnaInteractions output)"/>
+</inputs>
+<outputs>
+	<data name="output" format="json"/>
+</outputs>
+</tool>
+