<tool id="lncadeep" name="LncADeep" >
    <description>"LncADeep"</description>
    <requirements>
        <container type="docker">bianca7/lncadeep</container>
    </requirements>
    <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno
      -o test
      -l $RNA_FILE
      -p $PROTEIN_FILE
      -a 1
      && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results
    ]]></command>
    <inputs>
        <param type="data" name="RNA_FILE" format="fasta" label="RNA  sequences in FASTA format" />
        <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" />
    </inputs>
    <outputs>
        <data name="results" format="tar" />
    </outputs>
</tool>