Mercurial > repos > erasmus-medical-center > dr_disco

comparison dr-disco_integrate.xml @ 7:6b87499054f6 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 39fc49ee3ea0645de59259c1a3bc0d2f1fcdc23c
author erasmus-medical-center
date Thu, 14 Sep 2017 06:24:47 -0400
parents 76a3992021c1
children 922b52cf9b35
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6:d58d99a070ce 7:6b87499054f6
17 '${dr_disco_classify_output}' 17 '${dr_disco_classify_output}'
18 '${dr_disco_integrate_output}' 18 '${dr_disco_integrate_output}'
19 ]]></command> 19 ]]></command>
20 20
21 <inputs> 21 <inputs>
22 <param name="dr_disco_classify_output" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> 22 <param name="dr_disco_classify_output" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" />
23 <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/> 23 <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/>
24 </inputs> 24 </inputs>
25 25
26 <outputs> 26 <outputs>
27 <data name="dr_disco_integrate_output" format="tabular" label="${tool.name} on ${dr_disco_classify_output.name}" /> 27 <data name="dr_disco_integrate_output" format="tabular" label="${tool.name} on ${dr_disco_classify_output.name}" />