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comparison dr-disco_detect.xml @ 6:d58d99a070ce draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 9e318ac5d6b229cf04f6d78d897231aad4cf92e2
author erasmus-medical-center
date Thu, 14 Sep 2017 05:55:35 -0400
parents 5348cfd3ba5c
children 922b52cf9b35
comparison
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5:76a3992021c1 6:d58d99a070ce
13 --min-e-score '${min_e_score}' 13 --min-e-score '${min_e_score}'
14 '${star_discordant_alignment_fixed}' 14 '${star_discordant_alignment_fixed}'
15 '${output_fusion_events}' 15 '${output_fusion_events}'
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <param name="star_discordant_alignment_fixed" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> 18 <param name="star_discordant_alignment_fixed" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" />
19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0" 19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0"
20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." /> 20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." />
21 </inputs> 21 </inputs>
22 22
23 <outputs> 23 <outputs>