Mercurial > repos > erasmus-medical-center > dr_disco
comparison dr-disco_fix.xml @ 0:fca9c1ace23c draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit a6e0161a14202e3fc166b3cf8ecbafed54ec403a
| author | erasmus-medical-center |
|---|---|
| date | Wed, 25 Jan 2017 08:06:06 -0500 |
| parents | |
| children | 9495360713d4 |
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| -1:000000000000 | 0:fca9c1ace23c |
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| 1 <tool id="dr_disco_fix" name="Dr. Disco (fix)" version="@TOOL_VERSION@-g0"> | |
| 2 <description>Fixes and annotates chimeric alignments</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 | |
| 7 <expand macro="requirements" /> | |
| 8 <expand macro="version_command" /> | |
| 9 | |
| 10 <command><![CDATA[ | |
| 11 dr-disco fix '${output}' '${star_discordant_alignment}' | |
| 12 ]]></command> | |
| 13 <inputs> | |
| 14 <param name="star_discordant_alignment" type="data" format="bam" label="Discordant alignment file of STAR" /> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="output" format="bam" label="${tool.name} on ${star_discordant_alignment}" /> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 </tests> | |
| 21 | |
| 22 <help> | |
| 23 </help> | |
| 24 | |
| 25 <expand macro="citations"/> | |
| 26 </tool> |