Mercurial > repos > erasmus-medical-center > dr_disco

comparison dr-disco_detect.xml @ 11:3743fd602fa9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 183cebdfe3a34204fd8aa1c6dce6bf6514b94c2d
author erasmus-medical-center
date Fri, 03 Nov 2017 07:23:57 -0400
parents 922b52cf9b35
children
comparison
equal deleted inserted replaced
10:f2c70d589596 11:3743fd602fa9
32 <output name="output_fusion_events" file="detect.txt" /> 32 <output name="output_fusion_events" file="detect.txt" />
33 </test> 33 </test>
34 </tests> 34 </tests>
35 35
36 <help><![CDATA[ 36 <help><![CDATA[
37
38 **What it does** 37 **What it does**
39 38
40 Detects junctions in ('dr-disco fix' prepared) Chimeric alignments and tries to reconstruct fusion genes and genomic breakpoints using a Graph data structure. 39 * Step 2 in dr-disco pipeline
41 40
42 This software is in particular designed for RNA-Seq data prepared with random hexamer priming because of the presence of intronic reads. 41 This tool detects junctions in ('dr-disco fix' prepared) Chimeric alignments and tries to reconstruct fusion genes and genomic breakpoints using a Graph data structure. This software is in particular designed for RNA-Seq data prepared with random hexamer priming because of the presence of intronic reads.
43 42
44 **Attributions** 43 **Attribution**
45 44
46 This work is part of Youri Hoogstrate's PhD thesis. 45 This work is part of Youri Hoogstrate's PhD thesis.
47 46
48 ]]></help> 47 ]]></help>
49 48