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view dr-disco_fix.xml @ 0:fca9c1ace23c draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit a6e0161a14202e3fc166b3cf8ecbafed54ec403a
author erasmus-medical-center
date Wed, 25 Jan 2017 08:06:06 -0500
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children 9495360713d4
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<tool id="dr_disco_fix" name="Dr. Disco (fix)" version="@TOOL_VERSION@-g0">
    <description>Fixes and annotates chimeric alignments</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    
    <expand macro="requirements" />
    <expand macro="version_command" />
    
    <command><![CDATA[
        dr-disco fix '${output}' '${star_discordant_alignment}'
    ]]></command>
    <inputs>
        <param name="star_discordant_alignment" type="data" format="bam" label="Discordant alignment file of STAR" />
    </inputs>
    <outputs>
        <data name="output" format="bam" label="${tool.name} on ${star_discordant_alignment}" />
    </outputs>
    <tests>
    </tests>
    
    <help>
    </help>
    
     <expand macro="citations"/>
</tool>