Mercurial > repos > erasmus-medical-center > dr_disco
changeset 9:c3ce472a315f draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 78dd573f8aa888ee261580852bf049b4b3500b52
| author | erasmus-medical-center |
|---|---|
| date | Tue, 26 Sep 2017 08:27:47 -0400 |
| parents | 922b52cf9b35 |
| children | f2c70d589596 |
| files | dr-disco_integrate.xml macros.xml test-data/classify_test_16.in.dbed test-data/classify_test_16.test-01.out.dbed test-data/classify_test_16.test-02.out.dbed test-data/classify_test_16.test-03.out.dbed test-data/classify_test_16.test-04.out.dbed test-data/classify_test_16.test-05.out.dbed test-data/classify_test_16.test-06.out.dbed test-data/classify_test_16.test-07.out.dbed test-data/classify_test_16.test-08.out.dbed test-data/detect.txt test-data/fix_test-01.fixed.bam test-data/integrate_test_terg_s041.in.dbed test-data/integrate_test_terg_s041.out.no-gtf.txt test-data/integrate_test_terg_s041.out.txt |
| diffstat | 16 files changed, 322 insertions(+), 322 deletions(-) [+] |
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--- a/dr-disco_integrate.xml Thu Sep 14 08:35:12 2017 -0400 +++ b/dr-disco_integrate.xml Tue Sep 26 08:27:47 2017 -0400 @@ -20,7 +20,7 @@ <inputs> <param name="dr_disco_classify_output" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> - <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/> + <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes: gene_name, transcript_id and transcript_version"/> </inputs> <outputs>
--- a/macros.xml Thu Sep 14 08:35:12 2017 -0400 +++ b/macros.xml Tue Sep 26 08:27:47 2017 -0400 @@ -1,12 +1,12 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.10.0">dr-disco</requirement> + <requirement type="package" version="0.11.0=py27_0">dr-disco</requirement> <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.10.0-g3</token> + <token name="@TOOL_VERSION@">0.11.0</token> <xml name="version_command"> <version_command>dr-disco --version | head -n 1</version_command>
--- a/test-data/classify_test_16.in.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.in.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 unclassified linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 unclassified linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 unclassified circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 unclassified circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 unclassified circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 unclassified circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 unclassified circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 unclassified circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 unclassified circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 unclassified circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 unclassified circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 unclassified linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 unclassified circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 unclassified circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 unclassified linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 unclassified linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 unclassified linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 unclassified linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 unclassified circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 unclassified circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 unclassified circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 unclassified circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 unclassified circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 unclassified circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 unclassified circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 unclassified circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 unclassified circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 unclassified circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 unclassified circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 unclassified circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 unclassified linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 unclassified circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 unclassified circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 unclassified linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 unclassified circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 unclassified circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 unclassified linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 unclassified circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 unclassified circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 unclassified circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-01.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-01.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-02.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-02.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,3 +1,3 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9)
--- a/test-data/classify_test_16.test-03.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-03.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-04.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-04.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-05.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-05.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-06.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-06.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-07.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-07.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/classify_test_16.test-08.out.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/classify_test_16.test-08.out.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,37 +1,37 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) -chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) -chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) -chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) -chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) -chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) -chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) -chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) -chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) -chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) -chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) -chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) -chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) -chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) -chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) -chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) -chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) -chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/detect.txt Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/detect.txt Tue Sep 26 08:27:47 2017 -0400 @@ -1,2 +1,2 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-B-acceptor pos-B-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 39877811 - 6 0 chr21 42873374 + 0 6 2995563 unclassified linear intronic 9 6 3 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 17.0000 37.3333 0.9994 0.0216 0.5774 24.0000 42.3333 0.9954 0.0611 2.3094 0.0000 0.3333 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-B-acceptor pos-B-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39877811 - 6 0 chr21 42873374 + 0 6 2995563 unclassified linear intronic 9 6 3 0 642 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 17.0000 37.3333 0.9994 0.0216 0.5774 24.0000 42.3333 0.9954 0.0611 2.3094 0.0000 0.3333 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(spanning_paired_1_t:3,spanning_paired_2_t:3)
--- a/test-data/integrate_test_terg_s041.in.dbed Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/integrate_test_terg_s041.in.dbed Tue Sep 26 08:27:47 2017 -0400 @@ -1,6 +1,6 @@ -chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure -chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) -chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) -chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) -chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) -chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 10000 0 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 10000 0 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 10000 0 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 10000 0 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 10000 0 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- a/test-data/integrate_test_terg_s041.out.no-gtf.txt Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/integrate_test_terg_s041.out.no-gtf.txt Tue Sep 26 08:27:47 2017 -0400 @@ -1,6 +1,6 @@ -shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure -1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) -1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) -2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) -3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) -4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4) +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 10000 0 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 10000 0 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 10000 0 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 10000 0 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 10000 0 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- a/test-data/integrate_test_terg_s041.out.txt Thu Sep 14 08:35:12 2017 -0400 +++ b/test-data/integrate_test_terg_s041.out.txt Tue Sep 26 08:27:47 2017 -0400 @@ -1,6 +1,6 @@ -shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure -1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) -1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) -2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) -3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) -4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4) +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge full-gene-disregulation frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 10000 0 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 10000 0 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000463138.1)-havana->ERG(ENST00000492833.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000398897.5)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000429727.6)-ensembl,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000453032.6)-ensembl_havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000468474.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000473107.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000481609.5)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000485493.1)-havana,TMPRSS2(ENST00000497881.5)-havana->ERG(ENST00000492833.5)-ensembl_havana TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000332149.9)-ensembl_havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+1)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000424093.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000454499.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000455813.1)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000288319.11)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398905.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398907.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398910.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398911.5)-havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000398919.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000417133.6)-ensembl_havana(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000429727.6)-ensembl(+1),TMPRSS2(ENST00000458356.5)-havana(+0)->ERG(ENST00000442448.5)-ensembl(+1) TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000332149.9)-ensembl_havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000398585.7)-ensembl(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000424093.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000454499.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000288319.11)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398905.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398907.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398910.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398911.5)-havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000398919.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000417133.6)-ensembl_havana(+0),TMPRSS2(ENST00000458356.5)-havana(+2)->ERG(ENST00000442448.5)-ensembl(+0) chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 10000 0 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 10000 0 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 10000 0 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)