Mercurial > repos > erasmus-medical-center > mycrobiota

annotate qcreport.xml @ 1:e93e39c121b1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit aadbfac9c48191cac625f10590082a6d1a0bfd09
author erasmus-medical-center
date Tue, 29 Jan 2019 12:13:23 -0500
parents 607c5e7e0a64
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
1 <tool id="mycrobiota-qc-report" name="QC report" version="1">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
2 <description>from count tables</description>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
3 <macros>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
4 <import>macros.xml</import>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
5 </macros>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
6 <command detect_errors="aggressive"><![CDATA[
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
7 python '$__tool_directory__/mycrobiota.py'
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
8 --command qc_report
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
9 #if $input.filetype == 'summarylog':
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
10 #for $i, $c in enumerate($input.summaryfiles):
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
11 --summary_log '${c.summary}'
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
12 --label '${c.label}'
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
13 #end for
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
14 #elif $input.filetype == 'counttable':
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
15 #for $i, $c in enumerate($input.counttables):
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
16 --count_table '${c.count_table}'
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
17 --label '${c.label}'
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
18 #end for
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
19 #end if
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
20 ]]></command>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
21 <inputs>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
22 <conditional name="input">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
23 <param name="filetype" type="select" label="Generate QC table from" help="">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
24 <option value="counttable">count tables</option>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
25 <option value="summarylog">summary.seqs log outputs</option>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
26 </param>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
27 <when value="counttable">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
28 <repeat name="counttables" title="Count Table" default="1" >
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
29 <param argument="--count_table" type="data" format="mothur.count_table" label="Coumt Table" help=""/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
30 <param argument="--label" type="text" size="100" value="" label="Enter a label for this step" help="e.g. trimmed by length"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
31 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
32 </when>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
33 <when value="summarylog">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
34 <repeat name="summaryfiles" title="Summary.seqs output log" default="1" >
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
35 <param argument="--summary" type="data" format="text" label="Summary File" help="logfile output of summary.seqs command"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
36 <param argument="--label" type="text" size="100" value="" label="Enter a label for this step" help="e.g. trimmed by length"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
37 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
38 </when>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
39 </conditional>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
40 </inputs>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
41 <outputs>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
42 <data name="allsamples" format="tabular" from_work_dir="all_qctable.tsv" label="${tool.name} on ${on_string}: QC table total counts"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
43 <collection name="persample" type="list" label="${tool.name} on ${on_string}: per-sample QC tables">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
44 <discover_datasets pattern=".*?persample_qctable_(?P&lt;designation&gt;.*)\.tsv" format="tabular"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
45 <filter> input['filetype'] == 'counttable' </filter>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
46 </collection>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
47 </outputs>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
48 <tests>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
49 <test><!-- test with count tables -->
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
50 <param name="filetype" value="counttable"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
51 <repeat name="counttables">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
52 <param name="count_table" value="test2.count_table"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
53 <param name="label" value="step1"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
54 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
55 <repeat name="counttables">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
56 <param name="count_table" value="test.count_table"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
57 <param name="label" value="step2"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
58 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
59 <output name="allsamples" md5="97725d04b9927724729f6cd902e10317" ftype="tabular"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
60 <output_collection name="persample" count="9">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
61 <element name="F3D144" md5="d86e633358e8f1518a4a8c2782a358ec"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
62 </output_collection>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
63 </test>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
64 <test><!-- test with summary logfiles -->
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
65 <param name="filetype" value="summarylog"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
66 <repeat name="summaryfiles">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
67 <param name="summary" value="summarylog1.txt"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
68 <param name="label" value="step1"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
69 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
70 <repeat name="summaryfiles">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
71 <param name="summary" value="summarylog2.txt"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
72 <param name="label" value="step2"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
73 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
74 <repeat name="summaryfiles">
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
75 <param name="summary" value="summarylog3.txt"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
76 <param name="label" value="step 3"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
77 </repeat>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
78 <output name="allsamples" md5="7e092deb126c537247e63a36def1d8fb" ftype="tabular"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
79 </test>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
80 </tests>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
81 <help>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
82 <![CDATA[
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
83 **What it does**
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
84
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
85 Given a set of count tables, make a summary table describing the differences in number of sequences.
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
86 ]]>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
87 </help>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
88 <expand macro="citations"/>
607c5e7e0a64 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
erasmus-medical-center
parents:
diff changeset
89 </tool>