<tool id="mycrobiota-otutable_add_blast" name="Add BLAST links" version="0.1">
    <description>to a mothur OTU table</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <command detect_errors="aggressive"><![CDATA[
        python '$__tool_directory__/mycrobiota.py'
            --command otutable_add_blast_links
            --otutable '$otutable'
            --fasta '$fasta'
    ]]></command>
    <inputs>
        <param argument="--otutable" type="data" format="tabular" label="OTU table" help=""/>
        <param argument="--fasta" type="data" format="fasta" label="OTU representatives fasta file" help=""/>
    </inputs>
    <outputs>
        <data name="otutable_with_blast" format="tabular" from_work_dir="otutable_with_blast.tsv" label="OTUtable with blast links on ${on_string}"/>
        <data name="filtered_otureps" format="fasta" from_work_dir="filtered_otureps.fasta" label="OTUtable with blast links on ${on_string}"/>
    </outputs>
    <tests>
        <test>
            <param name="otutable" value="otutable_without_blast.tsv"/>
            <param name="fasta" value="otureps.fasta"/>
            <output name="otutable_with_blast" file="otutable_with_blast.tsv"/>
        </test>
    </tests>
    <help><![CDATA[
        help text goes here
    ]]></help>
    <expand macro="citations"/>
</tool>