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1 <?xml version="1.0"?>
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2 <tool id="edu.tamu.cpt.gsaf.download" name="GSAF Download" version="1.0.0">
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3 <description>downloads data from UT's GSAF</description>
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4 <stdio>
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5 <exit_code level="fatal" range="1:"/>
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6 </stdio>
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7 <command interpreter="python">
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8 gsaf_download.sh "$url" ${data.id} > $data
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9 </command>
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10 <inputs>
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11 <param help="This link should be in an email from them, right click and [Copy Link Location]" label="GSAF URL" name="url" type="text" value="http://gsaf.s3.amazonaws.com/...">
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12 <sanitizer>
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13 <valid initial="string.printable">
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14 <remove value="'"/>
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15 <remove value="""/>
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16 </valid>
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17 </sanitizer>
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18 </param>
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19 </inputs>
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20 <outputs>
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21 <data format="fastq" name="data">
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22 <discover_datasets pattern="__designation__" ext="fastq" directory="output" visible="true" />
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23 </data>
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24 </outputs>
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25 <help>
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26 GSAF Fetcher
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27 =======================
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28
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29 Basic wrapper around GSAF's tool to download data.
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30 </help>
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31 <tests/>
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32 </tool>
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