Mercurial > repos > eric-rasche > gsaf_downloader

comparison gsaf_download.xml @ 1:3aab9c21be3e draft

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Added tool XML
author eric-rasche
date Fri, 05 Dec 2014 14:25:00 -0500
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children 9bbff491ddc9
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0:c892ae46653b 1:3aab9c21be3e
1 <?xml version="1.0"?>
2 <tool id="edu.tamu.cpt.gsaf.download" name="GSAF Download" version="1.0.0">
3 <description>downloads data from UT's GSAF</description>
4 <stdio>
5 <exit_code level="fatal" range="1:"/>
6 </stdio>
7 <command interpreter="python">
8 gsaf_download.sh "$url" ${data.id} > $data
9 </command>
10 <inputs>
11 <param help="This link should be in an email from them, right click and [Copy Link Location]" label="GSAF URL" name="url" type="text" value="http://gsaf.s3.amazonaws.com/...">
12 <sanitizer>
13 <valid initial="string.printable">
14 <remove value="&apos;"/>
15 <remove value="&quot;"/>
16 </valid>
17 </sanitizer>
18 </param>
19 </inputs>
20 <outputs>
21 <data format="fastq" name="data">
22 <discover_datasets pattern="__designation__" ext="fastq" directory="output" visible="true" />
23 </data>
24 </outputs>
25 <help>
26 GSAF Fetcher
27 =======================
28
29 Basic wrapper around GSAF's tool to download data.
30 </help>
31 <tests/>
32 </tool>