Mercurial > repos > eric-rasche > gsaf_downloader
comparison gsaf_download.xml @ 1:3aab9c21be3e draft
Added tool XML
author | eric-rasche |
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date | Fri, 05 Dec 2014 14:25:00 -0500 |
parents | |
children | 9bbff491ddc9 |
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0:c892ae46653b | 1:3aab9c21be3e |
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1 <?xml version="1.0"?> | |
2 <tool id="edu.tamu.cpt.gsaf.download" name="GSAF Download" version="1.0.0"> | |
3 <description>downloads data from UT's GSAF</description> | |
4 <stdio> | |
5 <exit_code level="fatal" range="1:"/> | |
6 </stdio> | |
7 <command interpreter="python"> | |
8 gsaf_download.sh "$url" ${data.id} > $data | |
9 </command> | |
10 <inputs> | |
11 <param help="This link should be in an email from them, right click and [Copy Link Location]" label="GSAF URL" name="url" type="text" value="http://gsaf.s3.amazonaws.com/..."> | |
12 <sanitizer> | |
13 <valid initial="string.printable"> | |
14 <remove value="'"/> | |
15 <remove value="""/> | |
16 </valid> | |
17 </sanitizer> | |
18 </param> | |
19 </inputs> | |
20 <outputs> | |
21 <data format="fastq" name="data"> | |
22 <discover_datasets pattern="__designation__" ext="fastq" directory="output" visible="true" /> | |
23 </data> | |
24 </outputs> | |
25 <help> | |
26 GSAF Fetcher | |
27 ======================= | |
28 | |
29 Basic wrapper around GSAF's tool to download data. | |
30 </help> | |
31 <tests/> | |
32 </tool> |