Mercurial > repos > eric-rasche > gsaf_downloader
diff gsaf_download.xml @ 1:3aab9c21be3e draft
Added tool XML
author | eric-rasche |
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date | Fri, 05 Dec 2014 14:25:00 -0500 |
parents | |
children | 9bbff491ddc9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gsaf_download.xml Fri Dec 05 14:25:00 2014 -0500 @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool id="edu.tamu.cpt.gsaf.download" name="GSAF Download" version="1.0.0"> + <description>downloads data from UT's GSAF</description> + <stdio> + <exit_code level="fatal" range="1:"/> + </stdio> + <command interpreter="python"> + gsaf_download.sh "$url" ${data.id} > $data +</command> + <inputs> + <param help="This link should be in an email from them, right click and [Copy Link Location]" label="GSAF URL" name="url" type="text" value="http://gsaf.s3.amazonaws.com/..."> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + </inputs> + <outputs> + <data format="fastq" name="data"> + <discover_datasets pattern="__designation__" ext="fastq" directory="output" visible="true" /> + </data> + </outputs> + <help> +GSAF Fetcher +======================= + +Basic wrapper around GSAF's tool to download data. +</help> + <tests/> +</tool>