<?xml version="1.0"?>
<tool id="edu.tamu.cpt.gsaf.download" name="GSAF Download" version="1.0.0">
  <description>downloads data from UT's GSAF</description>
  <stdio>
    <exit_code level="fatal" range="1:"/>
  </stdio>
  <command interpreter="python">
      gsaf_download.sh "$url" ${data.id} > $data
</command>
  <inputs>
      <param help="This link should be in an email from them, right click and [Copy Link Location]" label="GSAF URL" name="url" type="text" value="http://gsaf.s3.amazonaws.com/...">
      <sanitizer>
        <valid initial="string.printable">
         <remove value="&apos;"/>
         <remove value="&quot;"/>
        </valid>
      </sanitizer>
     </param>
  </inputs>
  <outputs>
    <data format="fastq" name="data">
        <discover_datasets pattern="__designation__" ext="fastq" directory="output" visible="true" />
    </data>
  </outputs>
  <help>
GSAF Fetcher
=======================

Basic wrapper around GSAF's tool to download data.
</help>
  <tests/>
</tool>