Mercurial > repos > erick-antezana > onto-toolkit
comparison onto-toolkit/INSTALL @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
| author | erick-antezana |
|---|---|
| date | Tue, 07 Jun 2011 17:51:45 -0400 |
| parents | |
| children | d2d26d330236 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:4484575e4186 |
|---|---|
| 1 INSTALL | |
| 2 ======= | |
| 3 | |
| 4 ONTO-Toolkit requires: | |
| 5 | |
| 6 1. Galaxy (latest version recommended): | |
| 7 | |
| 8 http://main.g2.bx.psu.edu/ | |
| 9 | |
| 10 2. ONTO-PERL (version >= 1.18): | |
| 11 | |
| 12 http://search.cpan.org/dist/ONTO-PERL/ | |
| 13 | |
| 14 After installing the required software: | |
| 15 | |
| 16 1. Copy the '/ontology/*.xml' to '$GALAXY_HOME/tools/' | |
| 17 | |
| 18 2. Copy the test data file 'pre_cco_core.obo' to '$GALAXY_HOME/test-data/' | |
| 19 | |
| 20 3. Adapt your 'tool_conf.xml' file by adding the 'ONTO-ToolKit' section: | |
| 21 | |
| 22 <section name="OBO Ontology manipulation" id="ONTO-ToolKit"> | |
| 23 <tool file="ontology/get_ancestor_terms.xml"/> | |
| 24 <tool file="ontology/get_parent_terms.xml"/> | |
| 25 <tool file="ontology/get_descendent_terms.xml"/> | |
| 26 <tool file="ontology/get_child_terms.xml"/> | |
| 27 <tool file="ontology/term_id_vs_term_def.xml"/> | |
| 28 <tool file="ontology/term_id_vs_term_name.xml"/> | |
| 29 <tool file="ontology/get_relationship_types.xml"/> | |
| 30 <tool file="ontology/obo2rdf.xml" /> | |
| 31 <tool file="ontology/obo2tran.xml" /> | |
| 32 <tool file="ontology/obo2owl.xml" /> | |
| 33 </section> | |
| 34 | |
| 35 4. Restart your Galaxy instance. | |
| 36 | |
| 37 Bugs/comments/questions/etc | |
| 38 =========================== | |
| 39 | |
| 40 ONTO-Toolkit is regularly updated, please report any bugs or | |
| 41 send your comments to erick.antezana -@- gmail.com |