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comparison onto-toolkit/tools/ontology/get_intersection_ontology_from.pl @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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-1:000000000000 0:4484575e4186
1 #!/usr/bin/perl -w
2
3 use OBO::Parser::OBOParser;
4 use OBO::Util::Ontolome;
5
6
7 use Carp;
8 use strict;
9 use warnings;
10
11 my @input_files = @ARGV;
12
13 my $parse_ont = OBO::Parser::OBOParser->new();
14 my $ome = OBO::Util::Ontolome->new();
15
16 my @input_ontos;
17 foreach(@input_files)
18 {
19 my $onto = $parse_ont->work($_) or warn "ontology not defined, check input files\n";
20 push @input_ontos, $onto;
21 }
22
23 my $intersection_ontology = $ome->intersection(@input_ontos);
24 $intersection_ontology->export(\*STDOUT, "obo");
25
26 exit 0;
27