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comparison onto-toolkit/tools/ontology/get_relationship_types.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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1 <tool id="get_relationship_types" name="Get all the relationship types in an ontology" version="1.22">
2 <description>Collects the relationship types in the given OBO ontology</description>
3 <command interpreter="perl">/usr/bin/get_relationship_types.pl $input_ontology > $output</command>
4 <inputs>
5 <param format="text" name="input_ontology" type="data" label="Source file"/>
6 </inputs>
7 <outputs>
8 <data format="tabular" name="output" />
9 </outputs>
10
11 <tests>
12 <test>
13 <param name="input" value="pre_cco_core.obo"/>
14 <output name="out_file" file="relationship_types.txt"/>
15 </test>
16 </tests>
17
18 <help>
19
20 .. class:: infomark
21
22
23 Collects all the names of the relationship_types in a given ontology.
24
25 **Example**
26
27 If you ask for the relationships of the Gene Ontology, you will get::
28
29 is_a
30 part_of
31 regulates
32 has_part
33 negatively_regulates
34 positively_regulates
35
36 **More information**
37
38 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
39 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
40 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
41
42 </help>
43
44 </tool>
45