<tool id="term_id_vs_term_name" name="Get all the term IDs and term names of a given OBO ontology" version="1.22">
  <description>Get all the term IDs and term names of a given OBO ontology</description>
  <command interpreter="perl">/usr/bin/term_id_vs_term_name.pl $input_ontology > $output</command>
  <inputs>
    <param format="text" name="input_ontology" type="data" label="Source file"/>
  </inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="pre_cco_core.obo"/>
      <output name="out_file" file="term_id_vs_term_name.txt"/>
    </test>
  </tests>

  <help>

.. class:: infomark

Generates a flat file with two columns (TAB separated) with the term_id and term_name from the elements of the given OBO ontology.


**Example**

If you ask for the term IDs and terms names of the Gene Ontology, you will get::

  GO:0050129	N-formylglutamate deformylase activity
  GO:0051663	oocyte nucleus localization involved in oocyte dorsal/ventral axis specification
  GO:0051712	positive regulation of killing of cells of another organism
  GO:0033972	proclavaminate amidinohydrolase activity
  GO:0032513	negative regulation of protein phosphatase type 2B activity
  GO:0008711	ADP-L-glycero-D-manno-heptose synthase activity
  GO:0006285	base-excision repair, AP site formation
  GO:0043527	tRNA methyltransferase complex
  ...
  ...

**More information**

  ONTO-PERL: An API supporting the development and analysis of bio-ontologies
  E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
  Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042

  </help>

</tool>