Mercurial > repos > erick-antezana > onto-toolkit
view onto-toolkit/tools/ontology/get_child_terms.xml @ 1:d2d26d330236
v 0.2: tools added for OPPL-galaxy
author | easr |
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date | Wed, 11 Apr 2012 10:33:41 +0200 |
parents | 4484575e4186 |
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<tool id="get_child_terms" name="Get the child terms of a given OBO term" version="1.22"> <description>Collects the child terms from a given term in the given OBO ontology</description> <command interpreter="perl">/usr/bin/get_child_terms.pl $input_ontology $term_id > $output</command> <inputs> <param format="text" name="input_ontology" type="data" label="Source file"/> <param name="term_id" type="text" size="30" value="" label="Term ID" /> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <param name="term_id" value="CCO:P0000020"/> <output name="out_file" file="children.txt"/> </test> </tests> <help> .. class:: infomark Collects the child terms (list of IDs) from a given term (existing ID) in the given OBO ontology. **Example** If you ask for the children of the Gene Ontology term with ID **GO:0000079** you will get:: GO:0031660 regulation of cyclin-dependent protein kinase activity during G2/M GO:0031657 regulation of cyclin-dependent protein kinase activity during G1/S GO:0045737 positive regulation of cyclin-dependent protein kinase activity GO:0045736 negative regulation of cyclin-dependent protein kinase activity **More information** ONTO-PERL: An API supporting the development and analysis of bio-ontologies E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 </help> </tool>