Mercurial > repos > erick-antezana > onto-toolkit
view onto-toolkit/tools/ontology/get_descendent_terms.xml @ 1:d2d26d330236
v 0.2: tools added for OPPL-galaxy
author | easr |
---|---|
date | Wed, 11 Apr 2012 10:33:41 +0200 |
parents | 4484575e4186 |
children |
line wrap: on
line source
<tool id="get_descendent_terms" name="Get the descendent terms of a given OBO term" version="1.22"> <description>Collects the descendent terms from a given term in the given OBO ontology</description> <command interpreter="perl">/usr/bin/get_descendent_terms.pl $input_ontology $term_id > $output</command> <inputs> <param format="text" name="input_ontology" type="data" label="Source file"/> <param name="term_id" type="text" size="30" value="" label="Term ID" /> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <param name="term_id" value="CCO:P0000020"/> <output name="out_file" file="descendents.txt"/> </test> </tests> <help> .. class:: infomark Collects the descendent terms (list of IDs) from a given term (existing ID) in the given OBO ontology. **Example** If you ask for the descendents of the Gene Ontology term with ID **GO:000741** you will get:: GO:0048288 nuclear membrane fusion during karyogamy GO:0000745 nuclear migration during conjugation without cellular fusion GO:0000744 karyogamy during conjugation without cellular fusion GO:0032871 regulation of karyogamy GO:0007344 pronuclear fusion GO:0000742 karyogamy during conjugation with cellular fusion GO:0010197 polar nucleus fusion GO:0000743 nuclear migration during conjugation with cellular fusion **More information** ONTO-PERL: An API supporting the development and analysis of bio-ontologies E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 </help> </tool>