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comparison w4mclassfilter.xml @ 9:1ced8b5dfa3e draft

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planemo upload for repository https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/tree/master commit ac7c79636d17f7d33f1e8e644db0ddd33d2057e8
author eschen42
date Wed, 28 Mar 2018 12:04:22 -0400
parents d5cf23369d12
children 649cb1bafd3e
comparison
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8:d5cf23369d12 9:1ced8b5dfa3e
1 <tool id="w4mclassfilter" name="W4m Data Subset" version="0.98.8"> 1 <tool id="w4mclassfilter" name="W4m Data Subset" version="0.98.9">
2 <description>Filter W4m data by values or metadata</description> 2 <description>Filter W4m data by values or metadata</description>
3 3
4 <!-- Here is the hyphenation standard that I *try* to apply consistently in my documentation: http://www.sandranoonan.com/dont-let-hyphenation-drive-crazy/ --> 4 <!-- Here is the hyphenation standard that I *try* to apply consistently in my documentation: http://www.sandranoonan.com/dont-let-hyphenation-drive-crazy/ -->
5 5
6 <requirements> 6 <requirements>
56 <add value="&#36;" /> <!-- dollar, dollar-sign --> 56 <add value="&#36;" /> <!-- dollar, dollar-sign -->
57 <add value="&#40;" /> <!-- left-paren --> 57 <add value="&#40;" /> <!-- left-paren -->
58 <add value="&#41;" /> <!-- right-paren --> 58 <add value="&#41;" /> <!-- right-paren -->
59 <add value="&#42;" /> <!-- splat, asterisk --> 59 <add value="&#42;" /> <!-- splat, asterisk -->
60 <add value="&#43;" /> <!-- plus --> 60 <add value="&#43;" /> <!-- plus -->
61 <add value="&#45;" /> <!-- dash, hyphen -->
61 <add value="&#44;" /> <!-- comma --> 62 <add value="&#44;" /> <!-- comma -->
62 <add value="&#46;" /> <!-- dot, period --> 63 <add value="&#46;" /> <!-- dot, period -->
63 <add value="&#58;" /> <!-- colon --> 64 <add value="&#58;" /> <!-- colon -->
64 <add value="&#59;" /> <!-- semi, semicolon --> 65 <add value="&#59;" /> <!-- semi, semicolon -->
65 <add value="&#63;" /> <!-- what, question mark --> 66 <add value="&#63;" /> <!-- what, question mark -->
168 </test> 169 </test>
169 <test> 170 <test>
170 <param name="dataMatrix_in" value="input_dataMatrix.tsv"/> 171 <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
171 <param name="sampleMetadata_in" value="input_sampleMetadata.tsv"/> 172 <param name="sampleMetadata_in" value="input_sampleMetadata.tsv"/>
172 <param name="variableMetadata_in" value="input_variableMetadata.tsv"/> 173 <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
173 <param name="classnameColumn" value="class"/> 174 <param name="classnameColumn" value="sampleMetadata"/>
174 <param name="sampleclassNames" value=""/> 175 <!-- test that hyphens in regular expressions work -->
176 <param name="sampleclassNames" value="HU_[0-9][0-9][0-9]"/>
175 <param name="wildcards" value="FALSE"/> 177 <param name="wildcards" value="FALSE"/>
176 <param name="inclusive" value="filter-out"/> 178 <param name="inclusive" value="filter-in"/>
177 <param name="variableRangeFilter" value="FEATMAX:20.93157:,mz:200:,rt::800"/> 179 <param name="variableRangeFilter" value="FEATMAX:20.93157:,mz:200:,rt::800"/>
178 <param name="transformation" value="log2"/> 180 <param name="transformation" value="log2"/>
179 <output name="dataMatrix_out"> 181 <output name="dataMatrix_out">
180 <assert_contents> 182 <assert_contents>
181 <has_text text="19.5109032146715" /> 183 <has_text text="19.5109032146715" />
805 807
806 ---- 808 ----
807 NEWS 809 NEWS
808 ---- 810 ----
809 811
812 Changes in version 0.98.9
813 =========================
814
815 New features
816
817 - Fixed bug.
818
819 Internal modifications
820
821 - Added the hyphen to the characters permitted within regular expressions.
822
810 Changes in version 0.98.8 823 Changes in version 0.98.8
811 ========================= 824 =========================
812 825
813 New features 826 New features
814 827