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comparison w4mcorcov.xml @ 7:066b1f409e9f draft

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planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit e73fabe1b3c871abbcb2e89914c181149c8e2066
author eschen42
date Thu, 26 Jul 2018 10:23:34 -0400
parents 7bd523ca1f9a
children 342570ad880c
comparison
equal deleted inserted replaced
6:7bd523ca1f9a 7:066b1f409e9f
1 <tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.10"> 1 <tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.11">
2 2
3 <description>OPLS-DA Contrasts of Univariate Results</description> 3 <description>OPLS-DA Contrasts of Univariate Results</description>
4 4
5 <macros> 5 <macros>
6 <xml name="paramPairSigFeatOnly"> 6 <xml name="paramPairSigFeatOnly">
200 <has_text text="vip4p" /> 200 <has_text text="vip4p" />
201 <has_text text="vip4o" /> 201 <has_text text="vip4o" />
202 <has_text text="level1Level2Sig" /> 202 <has_text text="level1Level2Sig" />
203 <!-- first matched line --> 203 <!-- first matched line -->
204 <has_text text="M349.2383T700" /> 204 <has_text text="M349.2383T700" />
205 <has_text text="-0.04051509" /> 205 <has_text text="-0.3704185" />
206 <has_text text="-0.001964912" /> 206 <has_text text="-36.6668927" />
207 <has_text text="0.02106343" /> 207 <has_text text="0.4914638" />
208 <has_text text="0.2446366813" /> 208 <has_text text="0.01302117" />
209 <!-- second matched line --> 209 <!-- second matched line -->
210 <has_text text="M207.9308T206" /> 210 <has_text text="M207.9308T206" />
211 <has_text text="0.504885262" /> 211 <has_text text="0.3235022" />
212 <has_text text="0.020749097" /> 212 <has_text text="5.97529097" />
213 <has_text text="0.207196379" /> 213 <has_text text="0.207196379" />
214 <has_text text="0.04438632" /> 214 <has_text text="0.04438632" />
215 <!-- third matched line -->
216 <has_text text="M211.0607T263" />
217 <has_text text="0.0680900" />
218 <has_text text="0.0020163" />
219 <has_text text="0.0201345" />
220 <has_text text="0.0690773" />
221 </assert_contents> 215 </assert_contents>
222 </output> 216 </output>
223 <output name="contrast_salience"> 217 <output name="contrast_salience">
224 <assert_contents> 218 <assert_contents>
225 <!-- column-labels line --> 219 <!-- column-labels line -->
264 <has_text text="vip4p" /> 258 <has_text text="vip4p" />
265 <has_text text="vip4o" /> 259 <has_text text="vip4o" />
266 <has_text text="level1Level2Sig" /> 260 <has_text text="level1Level2Sig" />
267 <!-- first matched line --> 261 <!-- first matched line -->
268 <has_text text="M200.005T296" /> 262 <has_text text="M200.005T296" />
269 <has_text text="-0.2803571" /> 263 <has_text text="-0.24533821" />
270 <has_text text="-0.0115899" /> 264 <has_text text="-3.3573953" />
271 <has_text text="0.1157346" /> 265 <has_text text="0.1157346" />
272 <has_text text="0.0647860" /> 266 <has_text text="0.0647860" />
273 </assert_contents> 267 </assert_contents>
274 </output> 268 </output>
275 <output name="contrast_salience"> 269 <output name="contrast_salience">
314 <has_text text="covariance" /> 308 <has_text text="covariance" />
315 <has_text text="vip4p" /> 309 <has_text text="vip4p" />
316 <has_text text="vip4o" /> 310 <has_text text="vip4o" />
317 <!-- first matched line --> 311 <!-- first matched line -->
318 <has_text text="M349.2383T700" /> 312 <has_text text="M349.2383T700" />
319 <has_text text="-0.4732226" /> 313 <has_text text="-0.37867079" />
320 <has_text text="-0.0506172" /> 314 <has_text text="-37.71066" />
321 <has_text text="0.5246766" /> 315 <has_text text="0.5246766" />
322 <has_text text="0.0103341" /> 316 <has_text text="0.0103341" />
323 <!-- second matched line --> 317 <!-- second matched line -->
324 <has_text text="M207.9308T206" /> 318 <has_text text="M207.9308T206" />
325 <has_text text="0.4927151" /> 319 <has_text text="0.31570433" />
326 <has_text text="0.0203715" /> 320 <has_text text="5.86655640" />
327 <has_text text="0.2111623" /> 321 <has_text text="0.2111623" />
328 <has_text text="0.0488654" /> 322 <has_text text="0.0488654" />
329 </assert_contents> 323 </assert_contents>
330 </output> 324 </output>
331 <output name="contrast_salience"> 325 <output name="contrast_salience">
372 <has_text text="vip4o" /> 366 <has_text text="vip4o" />
373 <!-- first matched line --> 367 <!-- first matched line -->
374 <has_text text="NM516T251" /> 368 <has_text text="NM516T251" />
375 <has_text text="flower_yes" /> 369 <has_text text="flower_yes" />
376 <has_text text="other" /> 370 <has_text text="other" />
377 <has_text text="0.3490559" /> 371 <has_text text="0.03402807" />
378 <has_text text="0.0260147" /> 372 <has_text text="0.03526926" />
379 <has_text text="0.4377872" /> 373 <has_text text="0.43664386" />
380 <has_text text="0.5916089" /> 374 <has_text text="0.587701897" />
381 <has_text text="0.0260147" /> 375 <has_text text="0.026082688" />
382 <has_text text="0.0438942" /> 376 <has_text text="0.0437742145" />
383 <has_text text="516.0845" /> 377 <has_text text="516.0845" />
384 <has_text text="250.8762" /> 378 <has_text text="250.8762" />
385 </assert_contents> 379 </assert_contents>
386 </output> 380 </output>
387 <output name="contrast_salience"> 381 <output name="contrast_salience">
731 OPLS-DA, SIMCA, and S-PLOT are registered trademarks of the Umetrics company. http://umetrics.com/about-us/trademarks 725 OPLS-DA, SIMCA, and S-PLOT are registered trademarks of the Umetrics company. http://umetrics.com/about-us/trademarks
732 726
733 727
734 Release notes 728 Release notes
735 ------------- 729 -------------
730
731 0.98.11
732
733 - bug fix: Readdress issue 2 - features now are pareto-scaled *and centered* per Wikland *op cit.*.
736 734
737 0.98.10 735 0.98.10
738 736
739 - new feature: C-plots of VIP versus correlation or relative covariance. 737 - new feature: C-plots of VIP versus correlation or relative covariance.
740 - bug fix: Handle issue 2 - features now are only pareto-scaled per Wikland *op cit.*. 738 - bug fix: Handle issue 2 - features now are only pareto-scaled per Wikland *op cit.*.