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comparison w4mcorcov.xml @ 11:ddcc33ff3205 draft

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planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit 4428e3252d54c8a8e0e5d85e8eaaeb13e9b21de7
author eschen42
date Wed, 05 Sep 2018 22:31:21 -0400
parents 9a52306991b3
children ddaf84e15d06
comparison
equal deleted inserted replaced
10:9a52306991b3 11:ddcc33ff3205
1 <tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.14"> 1 <tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.15">
2 <description>OPLS-DA Contrasts of Univariate Results</description> 2 <description>OPLS-DA Contrasts of Univariate Results</description>
3 <macros> 3 <macros>
4 <xml name="paramPairSigFeatOnly"> 4 <xml name="paramPairSigFeatOnly">
5 <param name="pairSigFeatOnly" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" 5 <param name="pairSigFeatOnly" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE"
6 label="Retain only pairwise-significant features" 6 label="Retain only pairwise-significant features"
417 <has_text text="covariance" /> 417 <has_text text="covariance" />
418 <has_text text="vip4p" /> 418 <has_text text="vip4p" />
419 <has_text text="vip4o" /> 419 <has_text text="vip4o" />
420 <!-- first matched line --> 420 <!-- first matched line -->
421 <has_text text="M349.2383T700" /> 421 <has_text text="M349.2383T700" />
422 <has_text text="-0.37867079" /> 422 <has_text text="0.43361563" />
423 <has_text text="-37.71066" /> 423 <has_text text="37.76875778" />
424 <has_text text="0.5246766" /> 424 <has_text text="0.54672558" />
425 <has_text text="0.0103341" /> 425 <has_text text="0.3920409" />
426 <!-- second matched line --> 426 <!-- second matched line -->
427 <has_text text="M207.9308T206" /> 427 <has_text text="M207.9308T206" />
428 <has_text text="0.31570433" /> 428 <has_text text="-0.3365475" />
429 <has_text text="5.86655640" /> 429 <has_text text="-6.337903" />
430 <has_text text="0.2111623" /> 430 <has_text text="0.270297" />
431 <has_text text="0.0488654" /> 431 <has_text text="0.037661" />
432 </assert_contents> 432 </assert_contents>
433 </output> 433 </output>
434 </test> 434 </test>
435 <!-- test #6 --> 435 <!-- test #6 - issue 6 -->
436 <test> 436 <test>
437 <param name="dataMatrix_in" value="input_dataMatrix.tsv"/> 437 <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
438 <param name="sampleMetadata_in" value="issue6_input_sampleMetadata.tsv"/> 438 <param name="sampleMetadata_in" value="issue6_input_sampleMetadata.tsv"/>
439 <param name="variableMetadata_in" value="input_variableMetadata.tsv"/> 439 <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
440 <param name="tesC" value="none"/> 440 <param name="tesC" value="none"/>
456 <has_text text="M349.2383T700" /> 456 <has_text text="M349.2383T700" />
457 <has_text text="-0.0435663" /> 457 <has_text text="-0.0435663" />
458 <has_text text="-1.9068114" /> 458 <has_text text="-1.9068114" />
459 <has_text text="0.0304592" /> 459 <has_text text="0.0304592" />
460 <has_text text="0.104748883" /> 460 <has_text text="0.104748883" />
461 </assert_contents>
462 </output>
463 </test>
464 <!-- test #6 - issue 8 -->
465 <test>
466 <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
467 <param name="sampleMetadata_in" value="issue8_input_sampleMetadata.tsv"/>
468 <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
469 <param name="tesC" value="none"/>
470 <param name="facC" value="k._10"/>
471 <param name="labelFeatures" value="3"/>
472 <param name="levCSV" value="k_3,k-4"/>
473 <param name="matchingC" value="none"/>
474 <output name="contrast_corcov">
475 <assert_contents>
476 <!-- column-labels line -->
477 <has_text text="featureID" />
478 <has_text text="factorLevel1" />
479 <has_text text="factorLevel2" />
480 <has_text text="correlation" />
481 <has_text text="covariance" />
482 <has_text text="vip4p" />
483 <has_text text="vip4o" />
484 <!-- k1 rejected by levCSV, leaving only k_3 and k-4 -->
485 <not_has_text text="k1" />
486 <not_has_text text="other" />
461 </assert_contents> 487 </assert_contents>
462 </output> 488 </output>
463 </test> 489 </test>
464 </tests> 490 </tests>
465 <help><![CDATA[ 491 <help><![CDATA[