Mercurial > repos > eschen42 > w4mcorcov
diff w4mcorcov_input.R @ 7:066b1f409e9f draft
planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit e73fabe1b3c871abbcb2e89914c181149c8e2066
author | eschen42 |
---|---|
date | Thu, 26 Jul 2018 10:23:34 -0400 |
parents | 50f60f94c034 |
children | 9a52306991b3 |
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--- a/w4mcorcov_input.R Wed Jul 18 12:35:55 2018 -0400 +++ b/w4mcorcov_input.R Thu Jul 26 10:23:34 2018 -0400 @@ -165,6 +165,10 @@ data_matrix <- as.matrix(data_matrix) } + # Omit any feature not found in variableMetadata and any sample not found in sampleMetadata + # For something more elaborate, see https://github.com/HegemanLab/w4mclassfilter + data_matrix <- data_matrix[rownames(data_matrix) %in% rownames(vrbl_metadata),colnames(data_matrix) %in% rownames(smpl_metadata)] + input_env$data_matrix <- data_matrix # ... } else {