Mercurial > repos > eschen42 > w4mcorcov
diff w4mcorcov_util.R @ 5:50f60f94c034 draft
planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit aff1790e25523d038a1e9528de748191c096132f
author | eschen42 |
---|---|
date | Fri, 30 Mar 2018 14:59:19 -0400 |
parents | 23f9fad4edfc |
children | ddcc33ff3205 |
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--- a/w4mcorcov_util.R Sun Mar 04 14:51:42 2018 -0500 +++ b/w4mcorcov_util.R Fri Mar 30 14:59:19 2018 -0400 @@ -21,66 +21,8 @@ return (retval) } -# turn off all plotting devices -dev.off.all <- function() { - while (!is.null(dev.list())) { dev.off() } -} - -# capture plot and write to PDF; then close any devices opened in the process -plot2pdf <- function( - file.name -, plot.function -, width = 12 -, height = 12 -) { - # capture plot and write to PDF - cur.dev <- dev.list() - filename <- file.name - pdf(file = filename, width = width, height = height) - plot.function() - # close any devices opened in the process - dev.off() - if (is.null(cur.dev)) { - dev.off.all() - } else { - while ( length(dev.list()) > length(cur.dev) ) { dev.off() } - } -} -# print and capture plot and write to PDF; then close any devices opened in the process -# This is needed for ggplot which does not print the plot when invoked within a function. -print2pdf <- function( - file.name -, plot.function -, width = 12 -, height = 12 -) { - plot2pdf( - file.name = file.name - , width = width - , height = height - , plot.function = function() { - print(plot.function()) - } - ) -} - -iso8601.znow <- function() -{ - strftime(as.POSIXlt(Sys.time(), "UTC"), "%Y-%m-%dT%H:%M:%SZ") -} - -# pdf.name <- function(name) -# { -# paste0(name, "_", iso8601.filename.fragment(), ".pdf") -# } -# -# tsv.name <- function(name) -# { -# paste0(name, "_", iso8601.filename.fragment(), ".tsv") -# } -# -# # pseudo-inverse - computational inverse non-square matrix a +# # pseudo-inverse - computational inverse of non-square matrix a # p.i <- function(a) { # solve(t(a) %*% a) %*% t(a) # }