Mercurial > repos > eschen42 > w4mcorcov
diff w4mcorcov_calc.R @ 14:90708fdbc22d draft default tip
"planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit 5fd9687d543a48a715b1180caf93abebebd58b0e"
| author | eschen42 |
|---|---|
| date | Wed, 18 Nov 2020 18:53:37 +0000 |
| parents | 2ae2d26e3270 |
| children |
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--- a/w4mcorcov_calc.R Wed Dec 12 09:20:02 2018 -0500 +++ b/w4mcorcov_calc.R Wed Nov 18 18:53:37 2020 +0000 @@ -22,8 +22,8 @@ , algoC = x_algorithm , predI = 1 , orthoI = if (ncol(x_dataMatrix) > 1) 1 else 0 - , printL = FALSE - , plotL = FALSE + , fig.pdfC = 'none' + , info.txtC = 'none' , crossvalI = x_crossval_i , scaleC = "pareto" # data centered and pareto scaled here only. This line fixes issue #2. ) @@ -443,6 +443,7 @@ # matchingC is one of { "none", "wildcard", "regex" } matchingC <- calc_env$matchingC labelFeatures <- calc_env$labelFeatures + minCrossvalI <- as.integer(calc_env$min_crossval_i) # arg/env checking if (!(facC %in% names(smpl_metadata))) { @@ -600,7 +601,7 @@ } , x_show_labels = labelFeatures , x_progress = progress_action - , x_crossval_i = min(7, length(chosen_samples)) + , x_crossval_i = min(minCrossvalI, length(chosen_samples)) , x_env = calc_env ) if ( is.null(my_cor_cov) ) { @@ -674,7 +675,7 @@ } , x_show_labels = labelFeatures , x_progress = progress_action - , x_crossval_i = min(7, length(chosen_samples)) + , x_crossval_i = min(minCrossvalI, length(chosen_samples)) , x_env = calc_env ) if ( is.null(my_cor_cov) ) { @@ -753,7 +754,7 @@ , x_prefix = "Features" , x_show_labels = labelFeatures , x_progress = progress_action - , x_crossval_i = min(7, length(chosen_samples)) + , x_crossval_i = min(minCrossvalI, length(chosen_samples)) , x_env = calc_env ) if ( is.null(my_cor_cov) ) { @@ -806,7 +807,7 @@ , x_prefix = "Features" , x_show_labels = labelFeatures , x_progress = progress_action - , x_crossval_i = min(7, length(chosen_samples)) + , x_crossval_i = min(minCrossvalI, length(chosen_samples)) , x_env = calc_env ) if ( is.null(my_cor_cov) ) {